DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAH5 and ptprga

DIOPT Version :10

Sequence 1:NP_001097988.2 Gene:CAH5 / 50102 FlyBaseID:FBgn0040629 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_001316793.1 Gene:ptprga / 561197 ZFINID:ZDB-GENE-101101-4 Length:1414 Species:Danio rerio


Alignment Length:291 Identity:83/291 - (28%)
Similarity:145/291 - (49%) Gaps:35/291 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 RQDRADEQA----AGEYNYDEQGDDWTGT---CQSGENQSPIDLIFEDSKI-VAIPRLRFNNYDQ 87
            |..||.|::    :|.|..|   ..|...   ||. .|||||::..:|:|: :....|..:.:|.
Zfish    49 RHRRAAEESYWAYSGTYGPD---TGWAAAFPECQE-RNQSPINIADQDTKVSMEYQELTLDGFDA 109

  Fly    88 PLQTPLVITNNGHTANMVIPQTRGGQRPSINGSLLPGNFEAQSVHFHWG-SREAKGSEHAINFQR 151
            .......:.|.|.|..:.:....     .:.|:.|||.|:|:.|.|||| |..:.||||:||.:|
Zfish   110 ESSNKTSMKNTGKTVAIFLKDDY-----FVRGAGLPGRFKAEKVEFHWGQSNGSDGSEHSINGRR 169

  Fly   152 YDVEMHI-VHKNTIYETMGEATMHPDGLAVLGVMFRAVDRQTSQHYGLNKIFNQLPRIVQYNSNA 215
            :.|||.| ::.:..::::..|......:|.:.|.|: ||.:.:.  .::.|.:.| |.|.::...
Zfish   170 FPVEMQIFMYNSDDFDSLNTAIREKRVIAAMAVFFQ-VDFKDNP--AVDPIIHGL-RGVVHHEKE 230

  Fly   216 TITGRLTVGQLLGNIVTGEFFTYNGSLTTPDCAEAVTWTVF--PDVLDYPRRQITKLWNLRDSRQ 278
            |......:..||.:.: |.::.|.||||||.|::.|.|.||  |.:|.|  :|:...:::..:.|
Zfish   231 TFLEPFVLRDLLPSSI-GSYYRYIGSLTTPPCSKVVEWIVFSRPVLLSY--KQLEAFYSIFTTEQ 292

  Fly   279 RP-------LINNYRSIQDTNSRDVYYRTIQ 302
            :.       |.||:|.:|..::|:|:...::
Zfish   293 QDHVKSVEYLRNNFRPLQSLDNREVFKSAVK 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAH5NP_001097988.2 Carb_anhydrase 50..299 CDD:459707 76/263 (29%)
ptprgaNP_001316793.1 alpha_CARP_receptor_like 71..319 CDD:239396 76/260 (29%)
FN3 348..426 CDD:214495
R-PTPc-G-1 817..1090 CDD:350505
R-PTP-G-2 1174..1378 CDD:350508
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.