DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CAH16 and ca16b

DIOPT Version :9

Sequence 1:NP_001287620.1 Gene:CAH16 / 50101 FlyBaseID:FBgn0040628 Length:286 Species:Drosophila melanogaster
Sequence 2:XP_001919055.3 Gene:ca16b / 569183 ZFINID:ZDB-GENE-080818-1 Length:1382 Species:Danio rerio


Alignment Length:248 Identity:69/248 - (27%)
Similarity:126/248 - (50%) Gaps:20/248 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 KHQSPI-LLDSRTARKWVLPGITFWHYYRLLKRPFYIRNNGHSISLDIPVTSNGRKPFITGGRLK 106
            ::|||: :||..|........:|...:.........::|.|.::|:   |..|..  |:.|..|.
Zfish    76 RNQSPVDILDPETQVSQECQELTLDGFETKSSNRTTMKNTGKTVSI---VLKNDY--FVRGAGLP 135

  Fly   107 GRYYADGLHFHWGSYK-SRGSEHLINKRRFDAEIHI-VHRNEKYRNIAQAVRQKDGLAVVAIMVA 169
            ||:.|:.:.|||||.. |.||||.||.::|..|:.| .:.::.:.:::.|::::..:|.:|:...
Zfish   136 GRFKAEKVEFHWGSTNGSAGSEHSINGKKFPVEMQIYFYNSDDFDSLSTAIKERRIIAAMAVFFQ 200

  Fly   170 IVRKDNAKSTPLSRLMEAVVRVPIEDSNATVFGQSSLDQLIGGVSHRDFFTYEGSLTTPLCDETV 234
            :..|||..:.|:...::.||....|.:..:...:..|...:|     .::.|.||||||.|.:.|
Zfish   201 VATKDNIAAEPIIAGLKRVVHHEKETNLGSFILRDLLPSSLG-----SYYRYTGSLTTPPCSKVV 260

  Fly   235 TWIVFTETTTVTMSSVSKFWLL-----RDHWG--HRLINNYRIVQDLNNRTVF 280
            .||:|:....::...:..|:.:     :||..  ..|.||:|.:|||::|.:|
Zfish   261 EWIIFSRPVYLSYHQLEAFYSIFTTEQQDHVKSVDYLRNNHRPIQDLDSRRIF 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CAH16NP_001287620.1 Carb_anhydrase 26..278 CDD:215000 67/244 (27%)
ca16bXP_001919055.3 alpha_CARP_receptor_like 62..314 CDD:239396 69/248 (28%)
FN3 340..417 CDD:214495
Herpes_BLLF1 450..>557 CDD:330317
PTPc 790..1057 CDD:214550
PTPc 1089..1347 CDD:214550
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3338
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.