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Protein Alignment CAH16 and Ca3

DIOPT Version :9

Sequence 1:	NP_001287620.1	Gene:	CAH16 / 50101	FlyBaseID:	FBgn0040628	Length:	286	Species:	Drosophila melanogaster
Sequence 2:	NP_062165.2	Gene:	Ca3 / 54232	RGDID:	2241	Length:	260	Species:	Rattus norvegicus

Alignment Length:	284	Identity:	84/284 - (29%)
Similarity:	129/284 - (45%)	Gaps:	61/284 - (21%)

- Green bases have known domain annotations that are detailed below.

  Fly    25 EWNYLK-NGKD-WEDL--CSSGKHQSPILLDSRTARKWVLPGITFWHYYRLLKRPFYIRNNGHSI 85
            ||.|.. ||.: |.:|  .:.|.:||||.|.::..|.  .|.:..|                 |:
  Rat     4 EWGYASHNGPEHWHELYPIAKGDNQSPIELHTKDIRH--DPSLQPW-----------------SV 49

  Fly    86 SLDIP-----VTSNGR-----------KPFITGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRR 134
            |.| |     :.:||:           :..:.||.|.|.|.....|.||||....||||.::..:
  Rat    50 SYD-PGSAKTILNNGKTCRVVFDDTFDRSMLRGGPLSGPYRLRQFHLHWGSSDDHGSEHTVDGVK 113

  Fly   135 FDAEIHIVHRNEKYRNIAQAVRQKDGLAVVAIMVAIVRKDNAKSTPLSRLMEAVVRVPIEDSNAT 199
            :.||:|:||.|.||....:|::|.||:|||.|.:.|.|:..    ....|::|:.::..:...|.
  Rat   114 YAAELHLVHWNPKYNTFGEALKQPDGIAVVGIFLKIGREKG----EFQILLDALDKIKTKGKEAP 174

  Fly   200 V--FGQSSLDQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSKFWLLRDHWGH 262
            .  |..|.|..     :.||::||.||.|||.|:|.:.|::..|..||:...::|   ||..:..
  Rat   175 FNHFDPSCLFP-----ACRDYWTYHGSFTTPPCEECIVWLLLKEPMTVSSDQMAK---LRSLFAS 231

  Fly   263 R-------LINNYRIVQDLNNRTV 279
            .       |:.|:|..|.:..|.|
  Rat   232 AENEPPVPLVGNWRPPQPIKGRVV 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.