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Protein Alignment CAH16 and Car2

DIOPT Version :9

Sequence 1:	NP_001287620.1	Gene:	CAH16 / 50101	FlyBaseID:	FBgn0040628	Length:	286	Species:	Drosophila melanogaster
Sequence 2:	NP_062164.1	Gene:	Car2 / 54231	RGDID:	2240	Length:	260	Species:	Rattus norvegicus

Alignment Length:	274	Identity:	91/274 - (33%)
Similarity:	136/274 - (49%)	Gaps:	43/274 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    26 WNYLK-NG-KDW--EDLCSSGKHQSPILLDSRTARKWVLPGITFWH----------YYRLLKRPF 76
            |.|.| || ::|  |...::|..|||:.:|:.||:          |          |.::..:.
  Rat     5 WGYSKSNGPENWHKEFPIANGDRQSPVDIDTGTAQ----------HDPSLQPLLICYDKVASKS- 58

  Fly    77 YIRNNGHSISLDIPVTSNGRKPF--ITGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEI 139
             |.|||||.:::.    :..:.|  :..|.|.|.|.....||||||...:||||.:||:::.||:
  Rat    59 -IVNNGHSFNVEF----DDSQDFAVLKEGPLSGSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAEL 118

  Fly   140 HIVHRNEKYRNIAQAVRQKDGLAVVAIMVAIVRKDNAKSTPLSRLMEAVVRVPIEDSNATVFGQS 204
            |:||.|.||.:..:||:..|||||:.|.:.|    ...|..|.::.||:..:..:...|......
  Rat   119 HLVHWNTKYGDFGKAVQHPDGLAVLGIFLKI----GPASQGLQKITEALHSIKTKGKRAAFANFD 179

  Fly   205 SLDQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSKFWLLR-DHWGHR---LI 265
            ....|.|.:   |::||.||||||...|.|||||..|..||:...:|.|..|. :..|..   ::
  Rat   180 PCSLLPGNL---DYWTYPGSLTTPPLLECVTWIVLKEPITVSSEQMSHFRKLNFNSEGEAEELMV 241

  Fly   266 NNYRIVQDLNNRTV 279
            :|:|..|.|.||.:
  Rat   242 DNWRPAQPLKNRKI 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.