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Protein Alignment CAH16 and Ca5b

DIOPT Version :9

Sequence 1:	NP_001287620.1	Gene:	CAH16 / 50101	FlyBaseID:	FBgn0040628	Length:	286	Species:	Drosophila melanogaster
Sequence 2:	NP_001005551.1	Gene:	Ca5b / 302669	RGDID:	1549783	Length:	317	Species:	Rattus norvegicus

Alignment Length:	266	Identity:	81/266 - (30%)
Similarity:	131/266 - (49%)	Gaps:	46/266 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly    35 WE--DLCSSGKHQSPILLDSRTARKW----VLPGITFWHYYRLLKRP----------FYIRNNGH 83
            ||  ||..:|..||||.:      :|    ..||:          :|          .:|.|||:
  Rat    52 WENLDLVPAGDRQSPINI------RWRDSVYDPGL----------KPLTISYDPATCLHIWNNGY 100

  Fly    84 SISLDIPVTSNGRKPFITGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEIHIVHRNE-K 147
            |..::...|::  |..|.||.|:..|.....|||||:..:.||||.::.:.:.||:|:||.|. |
  Rat   101 SFLVEFEDTTD--KSVIEGGPLEHNYRLKQFHFHWGAIDAWGSEHTVDSKCYPAELHLVHWNAVK 163

  Fly   148 YRNIAQAVRQKDGLAVVAIMVAIVRKDNAKSTPLSRLMEAVVRVPIEDSNATVFGQSSLDQLIGG 212
            :.:...|..:::||||:.:.:.:.:...    .|.:|::.:..:..:|: ...||  |.|.....
  Rat   164 FESFEDAALEENGLAVIGVFLKLGKHHK----ELQKLVDTLPSIKHKDT-LVKFG--SFDPSCLM 221

  Fly   213 VSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSKF-WLLRDHWGH---RLINNYRIVQD 273
            .:..|::||.||||||...|:||||:..:...|....:.:| .||....|.   |:::|:|.:|.
  Rat   222 PTCPDYWTYSGSLTTPPLSESVTWIIKKQPVEVDHDQLEQFRTLLFTSEGEKEKRMVDNFRPLQP 286

  Fly   274 LNNRTV 279
            |.||||
  Rat   287 LMNRTV 292

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.