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Protein Alignment CAH16 and Ca4

DIOPT Version :9

Sequence 1:	NP_001287620.1	Gene:	CAH16 / 50101	FlyBaseID:	FBgn0040628	Length:	286	Species:	Drosophila melanogaster
Sequence 2:	NP_062047.1	Gene:	Ca4 / 29242	RGDID:	2242	Length:	309	Species:	Rattus norvegicus

Alignment Length:	286	Identity:	95/286 - (33%)
Similarity:	136/286 - (47%)	Gaps:	24/286 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly     9 LLLLLPLAFY-QSTNGMEWNYLKNGKDWEDLCSSGK---------HQSPI-LLDSRTARKWVLPG 62
            ||.||.||:. .||....|.|....|:....||..:         .|||| ::.|:|.....|..
  Rat     4 LLALLALAYVAPSTEDSHWCYEIQAKEPNSHCSGPEQWTGDCKKNQQSPINIVTSKTKLNPSLTP 68

  Fly    63 ITFWHYYRLLKRPFYIRNNGHSISLDIPVTSNGRKPFITGGRLKGRYYADGLHFHWGSYKSRGSE 127
            .||..|.:  |:.:.::||.||:.:.:     |...:|.||.|..:|.|..||.||....::|||
  Rat    69 FTFVGYDQ--KKKWEVKNNQHSVEMSL-----GEDIYIFGGDLPTQYKAIQLHLHWSEESNKGSE 126

  Fly   128 HLINKRRFDAEIHIVHRNEKYRNIAQAVRQKDGLAVVAIMVAIVRKDNAKSTPLSRLMEAVVRVP 192
            |.|:.:.|..|:|:||:.....:..|....||.:||:|.||.:..:.|....|   |:||:.|:.
  Rat   127 HSIDGKHFAMEMHVVHKKMTTGDKVQDSDSKDKIAVLAFMVEVGNEVNEGFQP---LVEALSRLS 188

  Fly   193 IEDSNATVFGQSSLDQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSKFWLLR 257
            ...:|:||......|.|........:|.|:||||||.|||||.|.||.|...:......:|....
  Rat   189 KPFTNSTVSESCLQDMLPEKKKLSAYFRYQGSLTTPGCDETVIWTVFEEPIKIHKDQFLEFSKKL 253

  Fly   258 DHWGHRLIN---NYRIVQDLNNRTVF 280
            .:...:.:|   |.|.:|.|.||.||
  Rat   254 YYDQEQKLNMKDNVRPLQPLGNRQVF 279

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.