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Protein Alignment CAH16 and Car5a

DIOPT Version :9

Sequence 1:	NP_001287620.1	Gene:	CAH16 / 50101	FlyBaseID:	FBgn0040628	Length:	286	Species:	Drosophila melanogaster
Sequence 2:	NP_031634.2	Gene:	Car5a / 12352	MGIID:	101946	Length:	299	Species:	Mus musculus

Alignment Length:	309	Identity:	84/309 - (27%)
Similarity:	127/309 - (41%)	Gaps:	78/309 - (25%)

- Green bases have known domain annotations that are detailed below.

  Fly    14 PLAFYQ------STNGMEWNYLKNGKDWEDLC------------SSGKHQSPILL---------- 50
            |||..:      :|....|.:..:..:....|            :.|..||||.:
Mouse     9 PLAILRHVGLLCATGPQRWRFQHSCAEEHSNCARHPLWTGPVSSAEGTRQSPINIQWKDSVYDPQ 73

  Fly    51 --------DSRTARKWVLPGITFWHYYRLLKRPFYIRNNGH--SISLDIPVTSNGRKPFITGGRL 105
                    |:.:.|                    |:.|.|:  .:..|.....:|    |:||.|
Mouse    74 LAPLRVSYDAASCR--------------------YLWNTGYFFQVEFDDSCEDSG----ISGGPL 114

  Fly   106 KGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEIHIVHRNE-KYRNIAQAVRQKDGLAVVAIMVA 169
            ...|.....|||||:....||||.::...:.||:|:||.|. ||.|..:|...::||||:.:.:
Mouse   115 GNHYRLKQFHFHWGATDEWGSEHAVDGHTYPAELHLVHWNSTKYENYKKASVGENGLAVIGVFL- 178

  Fly   170 IVRKDNAKSTPLSRLMEAVVRVPIEDSNATV--FGQSSLDQLIGGVSHRDFFTYEGSLTTPLCDE 232
               |..|....|.:|::.:..|..:|:...:  |..|.|..     :.||::||.||||||...|
Mouse   179 ---KLGAHHQALQKLVDVLPEVRHKDTQVAMGPFDPSCLLP-----ACRDYWTYPGSLTTPPLAE 235

  Fly   233 TVTWIVFTETTTVTMSSVSKFWLL----RDHWGHRLINNYRIVQDLNNR 277
            :|||||......|:.|.:|.|..|    |......::||||.:|.|.:|
Mouse   236 SVTWIVQKTPVEVSPSQLSTFRTLLFSGRGEEEDVMVNNYRPLQPLRDR 284

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.