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Protein Alignment CAH16 and Car2

DIOPT Version :9

Sequence 1:	NP_001287620.1	Gene:	CAH16 / 50101	FlyBaseID:	FBgn0040628	Length:	286	Species:	Drosophila melanogaster
Sequence 2:	NP_001344263.1	Gene:	Car2 / 12349	MGIID:	88269	Length:	260	Species:	Mus musculus

Alignment Length:	272	Identity:	92/272 - (33%)
Similarity:	137/272 - (50%)	Gaps:	39/272 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly    26 WNYLK-NG-KDW-EDL-CSSGKHQSPILLDSRTARKWVLPGITFWHYYRLLKRPFYIR------- 79
            |.|.| || ::| :|. .::|..|||:.:|:.||:          |...|  :|..|.
Mouse     5 WGYSKHNGPENWHKDFPIANGDRQSPVDIDTATAQ----------HDPAL--QPLLISYDKAASK 57

  Fly    80 ---NNGHSISLDIPVTSNGRKPFITGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEIHI 141
               |||||.:::...:.:  ...:.||.|...|.....||||||...:||||.:||:::.||:|:
Mouse    58 SIVNNGHSFNVEFDDSQD--NAVLKGGPLSDSYRLIQFHFHWGSSDGQGSEHTVNKKKYAAELHL 120

  Fly   142 VHRNEKYRNIAQAVRQKDGLAVVAIMVAIVRKDNAKSTPLSRLMEAVVRVPIEDSNATVFGQSSL 206
            ||.|.||.:..:||:|.|||||:.|.:.|    ...|..|.:::||:..:..:...|........
Mouse   121 VHWNTKYGDFGKAVQQPDGLAVLGIFLKI----GPASQGLQKVLEALHSIKTKGKRAAFANFDPC 181

  Fly   207 DQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSKFWLLR-DHWG---HRLINN 267
            ..|.|.:   |::||.||||||...|.|||||..|..||:...:|.|..|. :..|   ..:::|
Mouse   182 SLLPGNL---DYWTYPGSLTTPPLLECVTWIVLREPITVSSEQMSHFRTLNFNEEGDAEEAMVDN 243

  Fly   268 YRIVQDLNNRTV 279
            :|..|.|.||.:
Mouse   244 WRPAQPLKNRKI 255

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.