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Protein Alignment CAH16 and Car1

DIOPT Version :9

Sequence 1:	NP_001287620.1	Gene:	CAH16 / 50101	FlyBaseID:	FBgn0040628	Length:	286	Species:	Drosophila melanogaster
Sequence 2:	NP_001077426.1	Gene:	Car1 / 12346	MGIID:	88268	Length:	261	Species:	Mus musculus

Alignment Length:	276	Identity:	82/276 - (29%)
Similarity:	134/276 - (48%)	Gaps:	44/276 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly    25 EWNY-LKNGKD-WEDL--CSSGKHQSPILLDSRTARKWVLPGITFWHYYRLLKRPFYIRNN---- 81
            :|.| .:||.| |..|  .::|.:||||.:.:..|.          |...|  :|..|..|
Mouse     5 DWGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEAN----------HDSSL--KPLSISYNPATA 57

  Fly    82 ------GHSISLDIPVTSNGRKPFITGGRLKGRYYADGLHFHWGSYKSRGSEHLINKRRFDAEIH 140
                  |||..:....:||  :..:.||.|...|.....|||||:....||||.::..|:..|:|
Mouse    58 KEIVNVGHSFHVIFDDSSN--QSVLKGGPLADSYRLTQFHFHWGNSNDHGSEHTVDGTRYSGELH 120

  Fly   141 IVHRNE-KYRNIAQAVRQKDGLAVVAIMVAIVRKDNAKSTPLSRLMEAVVRVPIEDSNA--TVFG 202
            :||.|. ||.:.::|:.:.||||::.:::    |....:..|.::::|:..|..:...|  |.|.
Mouse   121 LVHWNSAKYSSASEAISKADGLAILGVLM----KVGPANPSLQKVLDALNSVKTKGKRAPFTNFD 181

  Fly   203 QSSLDQLIGGVSHRDFFTYEGSLTTPLCDETVTWIVFTETTTVTMSSVSKF-WLLRDHWGH---R 263
            .|||..     |..|::||.||||.|...|:|||::..::.:::...:::. .||....|.   .
Mouse   182 PSSLLP-----SSLDYWTYFGSLTHPPLHESVTWVICKDSISLSPEQLAQLRGLLSSAEGEPAVP 241

  Fly   264 LINNYRIVQDLNNRTV 279
            :::|:|..|.|..|||
Mouse   242 VLSNHRPPQPLKGRTV 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.