DRSC/TRiP Functional Genomics Resources

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Protein Alignment mask and mib1

DIOPT Version :10

Sequence 1:NP_001247280.1 Gene:mask / 50070 FlyBaseID:FBgn0043884 Length:4010 Species:Drosophila melanogaster
Sequence 2:NP_648826.2 Gene:mib1 / 39750 FlyBaseID:FBgn0263601 Length:1226 Species:Drosophila melanogaster


Alignment Length:1599 Identity:306/1599 - (19%)
Similarity:483/1599 - (30%) Gaps:629/1599 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 SSTTTTTTTNISTGGGGSGSSGGGGGSTTVIANPASVTNTGAGSAAKFRAAVASAPSPALPATNA 212
            ||...:|..|.|.||||    |||||:.|     .|.|||.                     ||.
  Fly     8 SSAKDSTNANASGGGGG----GGGGGAPT-----NSNTNTN---------------------TNT 42

  Fly   213 PANATAAAAIAAIATAPAPSSSSSSSSSSKKTRAAVAALKRQVALQQQQPVTGNAPNMTSKDSAH 277
            .:.|......:|..|...........                          |:.|..|:     
  Fly    43 QSTAVGVVVSSAAGTGVGVGGGGGGG--------------------------GSLPGGTT----- 76

  Fly   278 LKFATTTLLMGAAAAAADSNAGAALGGSGAGGSGSSS-------SVGAVGGARMALNPAVDMANA 335
                             .|::.:|.||..|||.|:|:       |:..| |||:...|.      
  Fly    77 -----------------SSSSASAAGGVAAGGGGNSAAALVRRFSMEGV-GARVIRGPD------ 117

  Fly   336 AVLLKQKLKDAAAAASASASNRSATSSM------SSTASSLSSSAGIVNAISSALQNIITPDTDT 394
               .|...:|.......:..|..:...:      .:.|:...:.|..:..:.||...:....|..
  Fly   118 ---WKWNKQDGGEGHVGTVRNFESAEEVVVVWDNGTAANYRCAGAYDLRILDSAPTGVKHEGTMC 179

  Fly   395 DTEFYPQPVTTDLSESEEESVSEILLAFLCLRPDLLDDIPESDPDSCPH----------EGEVRE 449
            || ...||:.....:..|           |:..||.......|.....|          |..:.|
  Fly   180 DT-CRQQPIFGIRWKCAE-----------CINYDLCSICYHGDKHHLRHRFYRITTPGGERTMLE 232

  Fly   450 DEDETEE------------------ESEDSDESEGEEEEEDE----------EEIDVLQDNDADD 486
            ...::::                  :.||.|...|...:.:|          ....|:.||.:.:
  Fly   233 PRRKSKKVLARGIFPGARVVRGVDWQWEDQDGGVGRRGKVNEIQDWSSASPRSAAYVIWDNGSKN 297

  Fly   487 ------EEIDDEDEEEDAPEVSSFLLDANNKRSSNI----SALLEAAANEKAP------------ 529
                  |.:.|             |...|:.:.||:    ..||......|.|            
  Fly   298 LYRVGFEGMAD-------------LKVVNDAKGSNVYRDHLPLLGENGPGKGPHGFQIGDKVTVD 349

  Fly   530 ----VLRHATH--------------------AIDE----------------TKQALTKMRCASS- 553
                :::...|                    .|||                ....|||:...:: 
  Fly   350 LDLEIVQSLQHGHGGWTDGMFECLSNAGMVVGIDEDHDIVVAYNSGNRWTFNPAVLTKVSSPTTA 414

  Fly   554 -PRDKNGFSRSLVAACTDNDVNTVKRLLCKGNVNLNDAAAST-----------DDGESLLSMA-C 605
             |..:.|   .:|..|  :||.::| :|.:|:....||...|           .|.:..:.:. .
  Fly   415 PPEFQVG---DIVKIC--SDVESIK-ILQRGHGEWADAMQLTLGKIGRVQQVYHDNDLKVEVGNT 473

  Fly   606 SAGYYELAQVLLAMSAAQVEDKGQKDSTPLMEAASAGHLDIVKLLLNHNA--------------- 655
            |..|..||...:|.|.|  .|.......|..|..||    |:|.|...|.               
  Fly   474 SWTYNPLAVCKVASSTA--SDGSCAPVIPSSERLSA----ILKKLFEPNVSGDATEEFVKAAANG 532

  Fly   656 --------------------------DVNAH-CATGNTPLMFACAGGQVDVVKVLLKHGANVEEQ 693
                                      |||.: ...|:|.|..|...|.::|::|||:|..:||.:
  Fly   533 FAARCEEYLAGAAQPSTSSASPSSGPDVNVNGVFAGHTALQAASQNGHIEVIQVLLRHAVDVEIE 597

  Fly   694 NENGHTPLMEAASAGHVEVAKVLLEHGAGINTHSNEFKESALTLACYKGHLDMVRFLLQAGADQE 758
            :::|...:..||......|.::|.:.||.:|.. |:.::::|.:|..||||::|:.||..|.   
  Fly   598 DKDGDRAVHHAAFGDEAAVIEILAKAGADLNAR-NKRRQTSLHIAVNKGHLNVVKTLLTLGC--- 658

  Fly   759 HKTDEMHTALMEASMDGHVEVARLLLDSGAQVNMPTDSFESPLTLAACGGHVELATLLIERGANI 823
                  |.:|.::..|                        :||..|....|.|:.:||::.||:|
  Fly   659 ------HPSLQDSEGD------------------------TPLHDAISKEHDEMLSLLLDFGADI 693

  Fly   824 EEVNDEGYTPLMEAAREGHEEMVALLLSKGANINATTEETQE---TALTLACCGGFMEVAAFLIK 885
            ...|:.|:..|..||.:|:...:.:||:| .|.....||.::   |||.||.....:|:|..|:.
  Fly   694 TLNNNNGFNALHHAALKGNPSAMKILLTK-TNRPWIVEEKKDDGYTALHLAALNNHVEIAELLVH 757

  Fly   886 EGANLELGASTPLMEASQEGHTDLVSFLLKKKANVHAETQTGDTALTHACENGHTDAAGVLLSYG 950
            .|                             |||:..:.....|||..|.|..|.....:|:..|
  Fly   758 MG-----------------------------KANMDRQNVNLQTALHLAVERQHVQIVKLLVQDG 793

  Fly   951 AELEHESEGGRTPLMKACRAGHLCTVKFLIQKGANVNK-----QTTSNDHTALSLACAGGHQSVV 1010
            |:|....:.|.|||.:|.|...|..:|.| |......|     :..:|...:.|:||        
  Fly   794 ADLNIPDKDGDTPLHEALRHHTLSQLKQL-QDVEGFGKLLMGLRNANNKKASASIAC-------- 849

  Fly  1011 ELLLKNNADPFHKLKDNSTMLIEASKGGHTRVVELLFRYPNISPTENAASANVTQAAPTSNQPGP 1075
             .|..|.||...|                                      |..|..|....|.|
  Fly   850 -FLAANGADLTLK--------------------------------------NRKQQTPLDLCPDP 875

  Fly  1076 NQMRQKIMKQQLQHQLQQLNAPPGLHELSEAARASNQQHFHQQQFSSAGNGSSNIVAMGTGDFLD 1140
            | :.:.::|...:.:......|..:...|.:|||                               
  Fly   876 N-LCKTLVKCYNERKTDDSELPGNVAGTSSSARA------------------------------- 908

  Fly  1141 AGELQLTATAGMSAGAGTSTTGSETGMEEYGEVGGIDLTTLGAQQQEGLIAKSRLFHLQQQQQQQ 1205
                        .|.:|:....|...|         .|::|.|.......:.|.:|.|       
  Fly   909 ------------RAASGSLNQSSSVNM---------PLSSLAASSTFPAASSSSIFAL------- 945

  Fly  1206 QQQQQQQQQQQQQQQQQQQQQQQPP--AAGQHQLVPCKHFDLD-----MEHINSLQPPQKAPPAP 1263
                     .....:..|...:.||  :|...:.:.|.....|     ..|::..:     ..||
  Fly   946 ---------NGIANEMSQSLHEDPPKSSASLDECLVCSDAKRDTVFKPCGHVSCCE-----TCAP 996

  Fly  1264 PVLFHTVCQQPVMQQQQQQLQPGQLKLKAMLPNRNRALKTAEVVEFIDCPVDQQQPGEQVRTQPL 1328
            .|....:|::.|..:::..        :.::.:..||     .|.|..|       |..|     
  Fly   997 RVKKCLICRETVSSREKID--------ECLVCSDRRA-----AVFFRPC-------GHMV----- 1036

  Fly  1329 GEDGKTPQFACAGEDPRLQRRRGFMPELKKGELPPESSSSDPNELALKGADNNQPVPTALDNSAC 1393
                     ||                        |..|:    |..|.......:...|..|.|
  Fly  1037 ---------AC------------------------EHCSA----LMKKCVLCRTQIDEILSFSLC 1064

  Fly  1394 AQIPARNSGGAITHSSEVLQSTAISDRPKVKATNKNNRKQAAAAAAAA-------------AAAA 1445
            .       ||              |.||:         |.:.||.|.|             ||||
  Fly  1065 C-------GG--------------SGRPE---------KVSVAAGAMATVGLPLPDDRFMEAAAA 1099

  Fly  1446 AAAAAAAQHA---QQVLPNPMVSIYNNLHLQHPHLQFQQQLQLHHQRVAGLDNAAAAAAAAASSA 1507
            ||.|.|:.|:   ...:..|:....|.|:.|                    :|..|||||:::.:
  Fly  1100 AACANASGHSVAMNNTVVTPVAGSSNQLNSQ--------------------NNLLAAAAASSNVS 1144

  Fly  1508 NMAYSISPASPLPSPTGSGNY-VD--QQLQQQSMDVALQ 1543
            |::   :..:.:.:|:...|: :|  |:|:||..|:..|
  Fly  1145 NLS---AAGNAMVAPSNVNNFQMDDVQKLKQQLQDIKEQ 1180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
maskNP_001247280.1 ANKYR 584..858 CDD:440430 77/327 (24%)
ANK repeat 596..628 CDD:293786 9/32 (28%)
ANK repeat 633..661 CDD:293786 11/69 (16%)
ANK repeat 663..694 CDD:293786 12/30 (40%)
ANK repeat 696..724 CDD:293786 7/27 (26%)
ANK repeat 730..760 CDD:293786 10/29 (34%)
ANKYR 744..1062 CDD:440430 72/325 (22%)
ANK repeat 765..794 CDD:293786 3/28 (11%)
ANK repeat 796..827 CDD:293786 10/30 (33%)
ANK repeat 829..858 CDD:293786 9/28 (32%)
ANK repeat 862..894 CDD:293786 10/34 (29%)
ANK repeat 896..923 CDD:293786 3/26 (12%)
ANK repeat 927..957 CDD:293786 10/29 (34%)
ANK repeat 959..991 CDD:293786 11/36 (31%)
ANK repeat 993..1023 CDD:293786 8/29 (28%)
ANK 2321..2349 CDD:197603
ANK repeat 2323..2352 CDD:293786
ANKYR 2336..2623 CDD:440430
ANK repeat 2354..2386 CDD:293786
ANK repeat 2390..2419 CDD:293786
ANK repeat 2421..2452 CDD:293786
ANK repeat 2456..2486 CDD:293786
ANK repeat 2492..2521 CDD:293786
ANK repeat 2523..2589 CDD:293786
ANK repeat 2560..2587 CDD:293786
ANK repeat 2591..2622 CDD:293786
KH-I_MASK 3047..3116 CDD:411832
mib1NP_648826.2 MIB_HERC2 109..166 CDD:461991 9/65 (14%)
ZZ_Mind_bomb 177..221 CDD:239079 11/55 (20%)
MIB_HERC2 248..313 CDD:461991 11/77 (14%)
SH3_15 340..405 CDD:465720 4/64 (6%)
SH3_15 418..482 CDD:465720 15/69 (22%)
ANKYR 559..824 CDD:440430 90/329 (27%)
ANK repeat 568..598 CDD:293786 12/29 (41%)
ANK repeat 600..631 CDD:293786 8/31 (26%)
ANK repeat 633..664 CDD:293786 12/39 (31%)
ANK repeat 666..695 CDD:293786 11/52 (21%)
ANK repeat 699..733 CDD:293786 11/34 (32%)
ANK repeat 735..767 CDD:293786 12/60 (20%)
ANK repeat 769..800 CDD:293786 10/30 (33%)
ANK repeat 802..862 CDD:293786 20/107 (19%)
RING-HC_MIB1_rpt1 968..1005 CDD:438384 6/41 (15%)
RING-HC_MIB1_rpt2 1015..1052 CDD:438385 13/98 (13%)
RING-HC_MIB1_rpt3 1181..1226 CDD:438387 306/1599 (19%)
Blue background indicates that the domain is not in the aligned region.

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