DRSC/TRiP Functional Genomics Resources

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Protein Alignment mask and Nfkbia

DIOPT Version :10

Sequence 1:NP_001247280.1 Gene:mask / 50070 FlyBaseID:FBgn0043884 Length:4010 Species:Drosophila melanogaster
Sequence 2:XP_063117633.1 Gene:Nfkbia / 25493 RGDID:3171 Length:327 Species:Rattus norvegicus


Alignment Length:406 Identity:92/406 - (22%)
Similarity:142/406 - (34%) Gaps:114/406 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   537 AIDETKQALTKMRCASSPRDKNGFSRSLVAACTDNDVNTVKRLLCKGNVNLNDAAAS-------- 593
            |::..:..|.|.|......|      |.:.:..|.|...:.:.|.:..:...:|..:        
  Rat    12 AMEGPRDGLKKERLVDDRHD------SGLDSMKDEDYEQMVKELREIRLQPQEAPLAAEPWKQQL 70

  Fly   594 TDDGESLLSMACSAGYYELAQVLLAMSAAQVEDKGQKDSTPLMEAASAGHLDIVKLLLNHNADVN 658
            |:||:|.|.:|..                      .::.|..||.......|:..|...:|..  
  Rat    71 TEDGDSFLHLAII----------------------HEEKTLTMEVIGQVKGDLAFLNFQNNLQ-- 111

  Fly   659 AHCATGNTPLMFACAGGQVDVVKVLLKHGANVEEQNENGHTPLMEAASAGHVEVAKVLLEHGAGI 723
                  .|||..|....|..:.:.|||.|.:.|.::..|:|||..|...|.:....|        
  Rat   112 ------QTPLHLAVITNQPGIAEALLKAGCDPELRDFRGNTPLHLACEQGCLASVAV-------- 162

  Fly   724 NTHSNEFKESALTLACYKGHLDMVRFLLQAGADQEHKTDEMHTALMEASMDGHVEVARLLLDSGA 788
                       ||..|...||..|   |||      .....||.|..||:.|::.:...|:..||
  Rat   163 -----------LTQTCTPQHLHSV---LQA------TNYNGHTCLHLASIHGYLGIVEHLVTLGA 207

  Fly   789 QVNM--PTDSFESPLTLAACGGHVELATLLIERGANIEEVNDEGYTPLMEAAREGHEEMVALLLS 851
            .||.  |.:. .:.|.||....:.:|.:||::.||::..|..:||:|..              |:
  Rat   208 DVNAQEPCNG-RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ--------------LT 257

  Fly   852 KGANINATTEETQETALTLACCGGFMEVAAFLIKEGANLELGASTPLMEASQEGHTDLVSFLLKK 916
            .|.  .:|..:.|...|||                 .||:     .|.|:..|...|..|...:.
  Rat   258 WGR--PSTRIQQQLGQLTL-----------------ENLQ-----TLPESEDEESYDTESEFTED 298

  Fly   917 KANVHAETQTGDTALT 932
            :..|| ..|:|..:||
  Rat   299 EVRVH-YCQSGPFSLT 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
maskNP_001247280.1 ANKYR 584..858 CDD:440430 65/283 (23%)
ANK repeat 596..628 CDD:293786 5/31 (16%)
ANK repeat 633..661 CDD:293786 6/27 (22%)
ANK repeat 663..694 CDD:293786 10/30 (33%)
ANK repeat 696..724 CDD:293786 7/27 (26%)
ANK repeat 730..760 CDD:293786 9/29 (31%)
ANKYR 744..1062 CDD:440430 49/191 (26%)
ANK repeat 765..794 CDD:293786 11/30 (37%)
ANK repeat 796..827 CDD:293786 8/30 (27%)
ANK repeat 829..858 CDD:293786 5/28 (18%)
ANK repeat 862..894 CDD:293786 6/31 (19%)
ANK repeat 896..923 CDD:293786 7/26 (27%)
ANK repeat 927..957 CDD:293786 3/6 (50%)
ANK repeat 959..991 CDD:293786
ANK repeat 993..1023 CDD:293786
ANK 2321..2349 CDD:197603
ANK repeat 2323..2352 CDD:293786
ANKYR 2336..2623 CDD:440430
ANK repeat 2354..2386 CDD:293786
ANK repeat 2390..2419 CDD:293786
ANK repeat 2421..2452 CDD:293786
ANK repeat 2456..2486 CDD:293786
ANK repeat 2492..2521 CDD:293786
ANK repeat 2523..2589 CDD:293786
ANK repeat 2560..2587 CDD:293786
ANK repeat 2591..2622 CDD:293786
KH-I_MASK 3047..3116 CDD:411832
NfkbiaXP_063117633.1 None
Blue background indicates that the domain is not in the aligned region.

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