DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCS2alpha and Si

DIOPT Version :9

Sequence 1:NP_652145.1 Gene:GCS2alpha / 49953 FlyBaseID:FBgn0027588 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001376155.1 Gene:Si / 497756 RGDID:3675 Length:1836 Species:Rattus norvegicus


Alignment Length:875 Identity:241/875 - (27%)
Similarity:366/875 - (41%) Gaps:182/875 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 LKGPTQAGRIRVQRETDGEIVITSEKNKAVIHGDPFRIDFFENDVLVVSVNAKNWLYFEHLRQKA 171
            :..||..|      |....:::|::...    |:.||..       :...|.|.   :|...|..
  Rat   143 IPSPTLFG------EDIKSVILTTQTQT----GNRFRFK-------ITDPNNKR---YEVPHQFV 187

  Fly   172 QEPTSHPAENENQQEQDAAVETPKAADTIDDPGAWEENF------KSHH----DSK----PYGPE 222
            :|.|..|                 ||||:.|....|..|      ||::    |:.    .|..:
  Rat   188 KEETGIP-----------------AADTLYDVQVSENPFSIKVIRKSNNKVLFDTSVGPLVYSNQ 235

  Fly   223 AVALDFSFPAAKVLFGIPEHADSFILKSTSGTDPYRLYNLDVF----------EYVVDSKMALYG 277
            .:.:....| ::.::|..||.             ::.:..|::          |...|:...|||
  Rat   236 YLQISTRLP-SEYIYGFGEHI-------------HKRFRHDLYWKTWPIFTRDEIPGDNNHNLYG 286

  Fly   278 SVPVIYG--HGAQRTAGVYWQNAAETWVDIQTSETNVVSSLVNFVSGSQKTPPPAAHFMSESGIV 340
            ......|  ..:.::.||:..|:....|.||                    |.|...:....||:
  Rat   287 HQTFFMGIEDTSGKSYGVFLMNSNAMEVFIQ--------------------PTPIITYRVTGGIL 331

  Fly   341 DAFIMLGPKPMDTFKQYAALTGTHELPQLFALAYHQSRWNYNDERDVTSVSAKFDEYNIPMDTMW 405
            |.:|.||..|....:||....|...:|..:.|.:..|||||.....|..|..:..|..||.|...
  Rat   332 DFYIFLGDTPEQVVQQYQEFIGRPAMPAYWNLGFQLSRWNYGSLDTVKEVVRRNREAGIPYDAQV 396

  Fly   406 LDIEHTDGKRYFTWDKFKFPHPLAMIKNLTELGRHLVVIVDPHI---KRDNNYFFHRDCTDRGYY 467
            .||::.:.|:.||:|:.||.......::|...|:..::|:||.|   ||.|...:..       |
  Rat   397 TDIDYMEDKKDFTYDEVKFNGLPEFAQDLHNHGQKYIIILDPAISINKRANGAEYQT-------Y 454

  Fly   468 VKTREGNDYEGW-------------CWPGAASYPDFFNPVVREYYASQYALDKFQTVTADVMLWN 519
            |:   ||:...|             .|||...||||.||...|::|::..| ..|.|..| .||.
  Rat   455 VR---GNEKNVWVNESDGTTPLIGEVWPGLTVYPDFTNPQTIEWWANECNL-FHQQVEYD-GLWI 514

  Fly   520 DMNEPSVF-------------NGPEITA--------PKDLI-----HYGNWEHRDVHNLYGHMHL 558
            ||||.|.|             |.|..|.        .|.|.     |:|  :..|||:|||:...
  Rat   515 DMNEVSSFIQGSLKGCTSNLLNYPPFTPGILDKVMYSKTLCMDAVQHWG--KQYDVHSLYGYSMA 577

  Fly   559 MGSFAGLQQRDPNQRPFILTRAHFAGSQRYAAIWTGDNFADWSHLQHSVKMCLTEAVAGFSFCGA 623
            :.:...:::..||:|.|||||:.||||.|:|..|.|||.|.|..::.|:...|...:.|....||
  Rat   578 IATEQAVERVFPNKRSFILTRSTFAGSGRHANHWLGDNTASWEQMEWSITGMLEFGIFGMPLVGA 642

  Fly   624 DVGAFFGNPDTELLERWYQTGAFLPFFRAHAHIDTKRREPWLFPERTRQV--IQNAVIKRYSYLP 686
            |:..|..:...||..||.|.|||.||.|.|.......::|..|.:.:..|  .::.:..||:.||
  Rat   643 DICGFLADTTEELCRRWMQLGAFYPFSRNHNAEGYMEQDPAYFGQDSLLVNTSRHYLTIRYTLLP 707

  Fly   687 LWYTAFYELELTGEPVIRPLLAQYPLDKEAFGVDNQLLVQDRLLVRPVMQQGVSKVDVYFPAIDD 751
            ..||.||...:.||.|.||.|.::..|..::..|.|.|....||:.||::.||..|..|.|    
  Rat   708 FLYTLFYRAHMFGETVARPFLYEFYDDTNSWIEDTQFLWGPALLITPVLRPGVENVSAYIP---- 768

  Fly   752 KKNGDWWYDVDT-YQRQERSGYVSVPVDDFKIPVWQRGGSIVPKKERQRRASTLMLHDPYTLIIC 815
               ...|||.:| .:|..|...:::.:...||.:..|||.|:|.:|.. ..:|....:|..||:.
  Rat   769 ---NATWYDYETGIKRPWRKERINMYLPGDKIGLHLRGGYIIPTQEPD-VTTTASRKNPLGLIVA 829

  Fly   816 LDRQGKASGSLYLDDEKSYAYRQGQRIHVNYEF--AHDQLV-----NSFVGKPKYKTLAWIERIV 873
            ||....|.|.|:.||.:|....: :::::.|.|  ::::||     :|:.   :..:||: :.|.
  Rat   830 LDDNQAAKGELFWDDGESKDSIE-KKMYILYTFSVSNNELVLNCTHSSYA---EGTSLAF-KTIK 889

  Fly   874 IAGL-EKVPSSASITVNGVSQQLEVLHHDN 902
            :.|| |.|   .||||....||:..  |.|
  Rat   890 VLGLGEDV---RSITVGENDQQMAT--HTN 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2alphaNP_652145.1 GH31_N 224..362 CDD:270212 28/149 (19%)
Glyco_hydro_31 343..792 CDD:279404 158/493 (32%)
GH31_GANC_GANAB_alpha 362..833 CDD:269889 166/515 (32%)
SiNP_001376155.1 Trefoil 80..118 CDD:395041
NtCtMGAM_N 135..244 CDD:407105 26/137 (19%)
GH31_N 237..353 CDD:270212 28/149 (19%)
GH31_MGAM_SI_GAA 353..717 CDD:269888 122/377 (32%)
PD 944..990 CDD:197472
NtCtMGAM_N 1004..1116 CDD:407105
GH31_N 1109..1223 CDD:270212
Glyco_hydro_31 1204..1700 CDD:395838
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342039
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000251
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.840

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