DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCS2alpha and tobi

DIOPT Version :9

Sequence 1:NP_652145.1 Gene:GCS2alpha / 49953 FlyBaseID:FBgn0027588 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_651391.1 Gene:tobi / 43072 FlyBaseID:FBgn0261575 Length:657 Species:Drosophila melanogaster


Alignment Length:813 Identity:162/813 - (19%)
Similarity:274/813 - (33%) Gaps:248/813 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MRFALATVAIIWALFVLADGVDPGNFKTC----EQSSF--------CRRSRKIQGSGSKYALIPG 53
            |||.|  ::::.|.|.|.:.|     .||    ::..|        .||..|:|     |.|:.|
  Fly     1 MRFIL--LSLLLASFCLWEAV-----HTCASIEQRYKFPNSNVYVRLRRGDKLQ-----YELMKG 53

  Fly    54 --TLNTYADSLTADLVNKENHHQFAFKLEALVGSTFRLQIDEKQPLRPRYRVEHAL-KGPTQAGR 115
              :|.|         |..:|....|..:|...||   .|:.:.|.     .||..| |....|| 
  Fly    54 EKSLQT---------VTFDNFDSSANLVETSSGS---YQLTDGQS-----TVEFTLVKSGVVAG- 100

  Fly   116 IRVQRETDGEIVITSEKNKAVIHGDPFRIDFFENDVLVVSVNAKNWLYFEHLRQKAQEPTSHPAE 180
                  |..||.........|:.|...|      |.:.:...:.:|.             |.|.:
  Fly   101 ------TGSEITHVKVSRDQVLQGTQPR------DCVPLKTGSTHWF-------------SGPEQ 140

  Fly   181 NENQQEQDAAVETPKAADTIDDPGAWEENFKSHHDSKPYGPEAVALDFSFPAAKVLFGIPEHADS 245
            .::.                     |... :..|.:..|.|:  .||        .||:.|.   
  Fly   141 KQHY---------------------WPVE-RQRHSNYSYLPK--ELD--------NFGVGER--- 170

  Fly   246 FILKSTSGTDPYRLYNLDVFEYVVDSKMALYGSVPVIYGHGAQRTAGVYWQNAAETWVDIQTSET 310
                       |.|....||.| |:|...|:          ..:.:..|......:.:.....:.
  Fly   171 -----------YWLNGDGVFLY-VESNTPLF----------IDQNSAAYPDQLCLSAISALPYDP 213

  Fly   311 NVVSS-LVNFVSGSQKTPPPAAH------FMSE-SGIVDAFIMLGPKPMDTFKQYAALTGTHELP 367
            .|.|: .|..|:.::..  .|||      |:.: :|..|..:::.| ...|:..|.|        
  Fly   214 RVTSAKFVYHVAVAKDA--KAAHRYAVKTFLGQPTGYPDERMVMHP-VWSTWALYKA-------- 267

  Fly   368 QLFALAYHQSRWNYNDERDVTSVSAK------FDEYNIPMDTMWLDIEHTDGKRYFTWDKFKFPH 426
                        ..:|  ||....||      |:...:.:|..|.|....     .|:.|.|||.
  Fly   268 ------------EVSD--DVVRDFAKQILDNGFNNSQLEIDDDWEDCYGA-----MTFRKNKFPD 313

  Fly   427 PLAMIKNLTELGRHLVVIVDPHIKRDNNYFFHRDCT-------DRGYYVKTREGNDYEGWCW--- 481
            ...:..:|..||..:.:.:.|        |.:.:||       .:||.|...||:....| |   
  Fly   314 SKTLTDDLKALGFRVTLWIHP--------FINNNCTAIYDEAKSKGYLVLDHEGSSDTQW-WNSK 369

  Fly   482 PGAASYPDFFNPVVREYYASQY-------ALDKFQTVTADVMLWNDMNEPS-VFNGPEITAPKDL 538
            |..|:..||....|:|:::.:.       .:|.|:.         |..|.| :.:.|.:.|...:
  Fly   370 PKDAAILDFTKTEVQEWFSKRLKRLQDEDGIDSFKF---------DAGETSWLPSDPVLQASSSM 425

  Fly   539 IHYGNWEHRDVHNLYGHMHLMGSFAGLQQ----RDPNQRPFILTRAHFAGSQRYAAIWTGDNFAD 599
            :       ..:..:..::..:.:|..:.:    ::...:|.            :..|...|:...
  Fly   426 V-------TPLQAVGDYVRTVAAFGDMVEVRSAQNTQDQPI------------FVRIVDKDSEWG 471

  Fly   600 WSH-LQHSVKMCLTEAVAGFSFCGADV---GAFFGNPDT-ELLERWYQTGAFLPFFRAHAHIDTK 659
            |:: |...:...|...:.|:.|...|:   ..::..|.| ||..||.|...|:|..:...     
  Fly   472 WNNGLLTLISSMLQMNLNGYPFVLPDMIGGNGYYEKPPTKELFLRWLQANVFMPALQFSF----- 531

  Fly   660 RREPWLFPERTRQVIQNAVIKRYSYLPLWYTAFYELELTGEPVIRPLLAQYPLDKEAFGVDNQLL 724
              .||.|.:....:.:|......:|.|.....|.....:||||..||....|.|:.|..:.::.|
  Fly   532 --VPWNFDDEAIAISKNFTALHATYTPYIMKLFKRAVDSGEPVNVPLWWIAPTDEVAQSIYDEFL 594

  Fly   725 VQDRLLVRPVMQQGVSKVDVYFPAIDDKKNGDW 757
            :.:.::..||:.:|.:|.|:|.|      .|:|
  Fly   595 LGEDIIAAPVVVEGATKRDIYLP------EGEW 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2alphaNP_652145.1 GH31_N 224..362 CDD:270212 28/145 (19%)
Glyco_hydro_31 343..792 CDD:279404 90/448 (20%)
GH31_GANC_GANAB_alpha 362..833 CDD:269889 86/429 (20%)
tobiNP_651391.1 Glyco_hydro_31 246..653 CDD:279404 92/454 (20%)
GH31_NET37 255..621 CDD:269878 89/443 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45450654
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1501
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm51469
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.740

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