DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCS2alpha and Ganab

DIOPT Version :9

Sequence 1:NP_652145.1 Gene:GCS2alpha / 49953 FlyBaseID:FBgn0027588 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_006231038.1 Gene:Ganab / 293721 RGDID:1309775 Length:966 Species:Rattus norvegicus


Alignment Length:977 Identity:440/977 - (45%)
Similarity:592/977 - (60%) Gaps:73/977 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ALATVAI----IWALFVLAD---------GVDPGNFKTCEQSSFCRRSRKIQGSGSKYALIPGTL 55
            |:|.||.    .|...|||.         .||..||||||:||||:|.|.|:...|.|..:..||
  Rat     3 AIAAVAARRRRSWLSLVLAYLGVCLGITLAVDRSNFKTCEESSFCKRQRSIRPGLSPYRALLDTL 67

  Fly    56 NTYADSLTADLVNKENHHQFAFKLEALVGSTFRLQIDEKQPLRPRYRVEHALKGPTQAGRIRVQR 120
            ....|:||..|.::........:|:.|..:..|::|||.:|.||||||...|.......|:.:..
  Rat    68 QLGPDALTVHLTHEVTKVLLVLELQGLQKNMTRIRIDELEPRRPRYRVPDVLVADPATARLSISG 132

  Fly   121 ETDGEIVITSEKN--KAVIHGDPFRIDFFENDVLVVSVNAKNWLYFEHLRQ-------------- 169
            ..|..:.:|..:.  |.::...|||:|..|:..|::||||:..:.|||.|.              
  Rat   133 RDDNSVELTVAEGPYKIILTAKPFRLDLLEDRSLLLSVNARGLMAFEHQRAPRVPFSDKVSLTLG 197

  Fly   170 ---------------------KAQEPTSHPAENENQQEQDAAVETPKAADTIDDPGAWEENFKSH 213
                                 ...||.:.|.:.:..:|.....|.       |:||||||.||:|
  Rat   198 SMWDKIKNLFSRQEPKDAAEGNGAEPEARPGDGDKPEETQEKAEK-------DEPGAWEETFKTH 255

  Fly   214 HDSKPYGPEAVALDFSFPAAKVLFGIPEHADSFILKSTSGTDPYRLYNLDVFEYVVDSKMALYGS 278
            .|||||||.:|.||||.|..:.::||||||||..||.|.|.:||||||||||:|.:::.||||||
  Rat   256 SDSKPYGPTSVGLDFSLPGMEHVYGIPEHADSLRLKVTEGGEPYRLYNLDVFQYELNNPMALYGS 320

  Fly   279 VPVIYGHGAQRTAGVYWQNAAETWVDI--QTSETNVVSSLVNFVSGSQKTPPPAAHFMSESGIVD 341
            |||:..|...|..|::|.|||||||||  .|:...:...:::::.||.:||.....:||||||||
  Rat   321 VPVLLAHSFHRDLGIFWLNAAETWVDISSNTAGKTLFGKMLDYLQGSGETPQTDIRWMSESGIVD 385

  Fly   342 AFIMLGPKPMDTFKQYAALTGTHELPQLFALAYHQSRWNYNDERDVTSVSAKFDEYNIPMDTMWL 406
            .|:||||..:|.|:|:|:||||..||.||:|.||||||||.||.||..|...||::|:|.|.:||
  Rat   386 VFLMLGPSVLDVFRQHASLTGTQALPPLFSLGYHQSRWNYRDEADVLEVDQGFDDHNMPCDVIWL 450

  Fly   407 DIEHTDGKRYFTWDKFKFPHPLAMIKNLTELGRHLVVIVDPHIKRDNNYFFHRDCTDRGYYVKTR 471
            ||||.|||||||||..:||.||.|:::|....|.||.|||||||.|:.|..|.:..:.|.|||||
  Rat   451 DIEHADGKRYFTWDPTRFPQPLNMLEHLASKRRKLVAIVDPHIKVDSGYRVHEELRNHGLYVKTR 515

  Fly   472 EGNDYEGWCWPGAASYPDFFNPVVREYYASQYALDKFQTVTADVMLWNDMNEPSVFNGPEITAPK 536
            :|:|||||||||:||||||.||.:|.::|:.:....::....::.:||||||||||||||:|..|
  Rat   516 DGSDYEGWCWPGSASYPDFTNPQMRAWWANMFNFHNYEGSAPNLFVWNDMNEPSVFNGPEVTMLK 580

  Fly   537 DLIHYGNWEHRDVHNLYG-HMHLMGSFAGLQQRDPN-QRPFILTRAHFAGSQRYAAIWTGDNFAD 599
            |.:|||.|||||:||:|| ::| |.:..||.||... :|||:|:||.|:||||:.|:|||||.|:
  Rat   581 DAVHYGGWEHRDIHNIYGLYVH-MATADGLIQRSGGIERPFVLSRAFFSGSQRFGAVWTGDNTAE 644

  Fly   600 WSHLQHSVKMCLTEAVAGFSFCGADVGAFFGNPDTELLERWYQTGAFLPFFRAHAHIDTKRREPW 664
            |.||:.|:.|||:.|:.|.||||||||.||.||:.|||.||||.||:.||||||||:||.|||||
  Rat   645 WDHLKISIPMCLSLALVGLSFCGADVGGFFKNPEPELLVRWYQMGAYQPFFRAHAHLDTGRREPW 709

  Fly   665 LFPERTRQVIQNAVIKRYSYLPLWYTAFYELELTGEPVIRPLLAQYPLDKEAFGVDNQLLVQDRL 729
            |...:.:..|::|:.:|||.||.|||.||:....|.||:|||..|||.|...|.:::|.::.|.|
  Rat   710 LLASQYQDAIRDALFQRYSLLPFWYTLFYQAHQEGFPVMRPLWVQYPEDMSTFSMEDQFMLGDAL 774

  Fly   730 LVRPVMQQGVSKVDVYFPAIDDKKNGDWWYDVDTYQRQERSGYVSVPVDDFKIPVWQRGGSIVPK 794
            |:.||...|...|.||.|..::.     |||:.:||:......:.:||....|||:||||:|||:
  Rat   775 LIHPVSDAGAHGVQVYLPGEEEV-----WYDIQSYQKHHGPQTLYLPVTLSSIPVFQRGGTIVPR 834

  Fly   795 KERQRRASTLMLHDPYTLIICLDRQGKASGSLYLDDEKSYAYRQGQRIHV-NYEFAHDQLVNSFV 858
            ..|.||:|..|..||.||.:.|..||.|.|.|:|||..::.|:......: .:.|:.:.||:|..
  Rat   835 WMRVRRSSDCMKEDPITLFVALSAQGTAQGELFLDDGHTFNYQNRHEFLLRRFSFSGNTLVSSSA 899

  Fly   859 G-KPKYKTLAWIERIVIAGLEKVPSSASITVNGVSQQLEVLHHD---NTVVVRKPGVKMDVDFAI 919
            . |...:|..||||:||.|..| |::..:...|..:......||   :.:.:|||||.:..|::|
  Rat   900 DPKGHLETPVWIERVVIMGAGK-PAAVVLQTKGSPESRLSFQHDPETSVLTLRKPGVNVASDWSI 963

  Fly   920 KL 921
            .|
  Rat   964 HL 965

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2alphaNP_652145.1 GH31_N 224..362 CDD:270212 74/139 (53%)
Glyco_hydro_31 343..792 CDD:279404 243/450 (54%)
GH31_GANC_GANAB_alpha 362..833 CDD:269889 253/472 (54%)
GanabXP_006231038.1 GH31_N 264..406 CDD:270212 74/141 (52%)
Glyco_hydro_31 387..832 CDD:279404 243/450 (54%)
GH31_GANC_GANAB_alpha 406..873 CDD:269889 253/472 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 539 1.000 Domainoid score I260
eggNOG 1 0.900 - - E1_COG1501
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5426
Inparanoid 1 1.050 775 1.000 Inparanoid score I504
OMA 1 1.010 - - QHG54072
OrthoDB 1 1.010 - - D100626at2759
OrthoFinder 1 1.000 - - FOG0000251
OrthoInspector 1 1.000 - - otm46446
orthoMCL 1 0.900 - - OOG6_100592
Panther 1 1.100 - - LDO PTHR22762
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1016
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.880

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