DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCS2alpha and ganc

DIOPT Version :9

Sequence 1:NP_652145.1 Gene:GCS2alpha / 49953 FlyBaseID:FBgn0027588 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_021323148.1 Gene:ganc / 100536353 ZFINID:ZDB-GENE-130530-754 Length:916 Species:Danio rerio


Alignment Length:894 Identity:360/894 - (40%)
Similarity:500/894 - (55%) Gaps:79/894 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 FKTCEQSSFCRRSRKIQGSGSKYALIPGTLNTYADSLTADLVNKENHHQFAFKLEALVGSTFRLQ 90
            |:...:..|.||.|  ..:.|:|.....|........:.:|..:::..:.:.::.|....|.|:.
Zfish    20 FRKNHEILFYRRQR--DKAVSQYFTSYETFVLTDGGASLELCERDSQDRLSLQIRATQNGTIRVS 82

  Fly    91 IDEKQPLRPRYRVEHALKGPTQAGRIRVQRETDGEIVIT--SEKNKAVIHGDPFRIDFFENDVLV 153
            |||.|.::|||:|...|.|..:...:||:.:.:..:.:|  ..:.:.:....||:::.......:
Zfish    83 IDELQLVKPRYQVSDVLVGELRYEPLRVEWKKEDCVCLTWGLGQYQLLAFFSPFKLEISCAGEEI 147

  Fly   154 VSVNAKNWLYFEHLRQKAQEPTSHPAENENQQEQDAAVETPKAADTIDDPGAWEENFKSHHDSKP 218
            |::|..|.|.||.|    |:|.|..:.|.::.:::..             |.|:|.|:...|.|.
Zfish   148 VTLNPGNKLCFETL----QDPASRSSSNSSEGDENCC-------------GLWKETFRQFEDIKA 195

  Fly   219 YGPEAVALDFSFPAAKVLFGIPEHADSFILKSTSGTDPYRLYNLDVFEYVVDSKMALYGSVPVIY 283
            .||.:|.||.|.......:|:|||||:.:||.||.::.|||||||||.|.::|::.||||||::.
Zfish   196 NGPSSVGLDLSLHGFNHTYGVPEHADTLLLKDTSVSEAYRLYNLDVFGYEINSRLGLYGSVPLLL 260

  Fly   284 GHGAQRTAGVYWQNAAETWVDIQTSETNVVSSLVNFVSGSQKTPPPA----------AHFMSESG 338
            .|..:|||||:|.|::||.||::          .|......:..||.          ..::||||
Zfish   261 AHKPERTAGVFWLNSSETLVDVK----------YNTEQNEDEDEPPGKKSRISPRTDVRWISESG 315

  Fly   339 IVDAFIMLGPKPMDTFKQYAALTGT------------------HELPQLFALAYHQSRWNYNDER 385
            .:|.||:|||.|...|.|||.|||.                  ..||.||:|..||.||||.||.
Zfish   316 TIDCFILLGPTPAQVFSQYAQLTGKCRCRLYNGCARNRPLLSYQALPPLFSLGNHQCRWNYEDEA 380

  Fly   386 DVTSVSAKFDEYNIPMDTMWLDIEHTDGKRYFTWDKFKFPHPLAMIKNLTELGRHLVVIVDPHIK 450
            ||.:|.|.||.:.||.|.:||||||||||||||||..:||:|..:..:|.:..|.||||.|||||
Zfish   381 DVKAVDAGFDLHGIPYDVIWLDIEHTDGKRYFTWDSKRFPNPAELQHHLMKKKRKLVVISDPHIK 445

  Fly   451 RDNNYFFHRDCTDRGYYVKTREGNDYEGWCWPGAASYPDFFNPVVREYYASQYALDKFQTVTADV 515
            .|.::..:.:....|::||.|||.|:||.||||.:.|.||.:...|.:||.|::|.|::..|..:
Zfish   446 MDPDWSIYCEAKKGGHFVKNREGFDFEGTCWPGESCYLDFSSSKTRLWYARQFSLSKYEGSTESL 510

  Fly   516 MLWNDMNEPSVFNGPEITAPKDLIHYGNWEHRDVHNLYGHMHLMGSFAGLQQRD-PNQRPFILTR 579
            .:||||||||||||||.|.|||.:|:|.||||::|||||....|.:|.||..|. ..:|||||||
Zfish   511 FVWNDMNEPSVFNGPEQTMPKDALHHGGWEHRELHNLYGFYQHMATFEGLLTRSGGTERPFILTR 575

  Fly   580 AHFAGSQRYAAIWTGDNFADWSHLQHSVKMCLTEAVAGFSFCGADVGAFFGNPDTELLERWYQTG 644
            :.||||||..|||||||.|.|.:|:.|:.|.|:.::.|..|||||||.|..:||.|||.||||.|
Zfish   576 SFFAGSQRLGAIWTGDNVATWEYLKISIPMLLSLSLTGIQFCGADVGGFVQDPDPELLVRWYQAG 640

  Fly   645 AFLPFFRAHAHIDTKRREPWLFPERTRQVIQNAVIKRYSYLPLWYTAFYELELTGEPVIRPLLAQ 709
            |..||||||:...|||||||||.|.....|::||..||..||.|||.|::......|.||||..:
Zfish   641 ALQPFFRAHSAKMTKRREPWLFGEEVTSAIRSAVQDRYCLLPYWYTLFHQAHTAALPPIRPLWVE 705

  Fly   710 YPLDKEAFGVDNQLLVQDRLLVRPVMQQGVSKVDVYFPAIDDKKNGDWWYDVDTYQRQERSGYVS 774
            :|.|...|.|:||.::...|||.||...||::|.|..|.     :.:.|||.:|.:..:.:..:.
Zfish   706 FPKDTSTFAVENQYMIGGALLVCPVTDPGVTEVKVLLPG-----SNELWYDTNTSEVHKGARSLD 765

  Fly   775 VPVDDFKIPVWQRGGSIVPKKERQRRASTLMLHDPYTLIICLDRQGKASGSLYLDDEKSYAYR-Q 838
            |||....:.|:||||::||::......:..:.|...||.:.||.:|||.|.|||||..|:.|| |
Zfish   766 VPVTLTTVLVFQRGGTVVPRRTACGSCTADLQHYTITLTVALDIKGKADGFLYLDDGHSFNYRDQ 830

  Fly   839 GQRIHVNYEFAHDQLVNS-------FVGKPKYKTLAWIERIVIAGLEKV 880
            .|.....:.....:||||       ||...|      :|.:||.||:.|
Zfish   831 MQFCLRRFSMQAGRLVNSCANDKGLFVSDDK------VETVVILGLKSV 873

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2alphaNP_652145.1 GH31_N 224..362 CDD:270212 62/147 (42%)
Glyco_hydro_31 343..792 CDD:279404 229/467 (49%)
GH31_GANC_GANAB_alpha 362..833 CDD:269889 233/489 (48%)
gancXP_021323148.1 GH31_N 201..339 CDD:270212 62/147 (42%)
GH31_GANC_GANAB_alpha 358..824 CDD:269889 232/470 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170582102
Domainoid 1 1.000 532 1.000 Domainoid score I270
eggNOG 1 0.900 - - E1_COG1501
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54072
OrthoDB 1 1.010 - - D100626at2759
OrthoFinder 1 1.000 - - FOG0000251
OrthoInspector 1 1.000 - - otm24289
orthoMCL 1 0.900 - - OOG6_100592
Panther 1 1.100 - - O PTHR22762
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1016
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.720

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