DRSC/TRiP Functional Genomics Resources

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Protein Alignment GCS2alpha and mgam

DIOPT Version :9

Sequence 1:NP_652145.1 Gene:GCS2alpha / 49953 FlyBaseID:FBgn0027588 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_012818887.1 Gene:mgam / 100379714 XenbaseID:XB-GENE-964595 Length:2697 Species:Xenopus tropicalis


Alignment Length:977 Identity:244/977 - (24%)
Similarity:384/977 - (39%) Gaps:229/977 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VAIIWALFVLADGVDPGNFKTCEQSSFCRRSRKIQGSGSKYALIPGTLNTYA------DSLTADL 66
            :.:.|..|..|.|.:                            :.|..||.|      ..|.|..
 Frog    88 INVPWCYFTNAHGYE----------------------------VKGKKNTQAGFEANLQRLPAPA 124

  Fly    67 VNKENHHQFAFKLEALVGSTFRLQIDEKQPLRPRYRVEHALKGPTQAGRIRVQRETDGEIVITSE 131
            :.:.|..|.....|....:.||.:|.:  |...|:.|.|                          
 Frog   125 IYENNIEQLLLAAEMQSNNRFRFKITD--PKSKRFEVPH-------------------------- 161

  Fly   132 KNKAVIHGDPFRIDFFENDVLVVSVNAKNWLYFEHLRQKAQEPTSHPAENENQQEQDAAVETPKA 196
                                             ||::    |.|...|.|.|...:  .::.|..
 Frog   162 ---------------------------------EHIK----EFTGSAASNLNYDYK--LLDKPFG 187

  Fly   197 ADTIDDPGAWEENFKSHHDSK--P--YGPEAVALDFSFPAAKVLFGIPEHADSFILKSTSGTDPY 257
            ...|.     :.|.:...||.  |  |..:.:.|....|::.: :|:.||.             :
 Frog   188 IQVIR-----KSNSRILFDSTIGPLLYADQVLQLSIKLPSSNI-YGLGEHV-------------H 233

  Fly   258 RLYNLDVFEYVVDSKMALY-------GSVPVIYG-----------HGAQRTAGVYWQNAAETWVD 304
            |.|..|.:.    .|.|::       |....:||           .|:  :.||:..|:....|.
 Frog   234 RQYKHDTYW----KKWAIFTRDEFPNGDGNNLYGAHTFFLCLEDTDGS--SFGVFLMNSNAMEVT 292

  Fly   305 IQTSETNVVSSLVNFVSGSQKTPPPAAHFMSESGIVDAFIMLGPKPMDTFKQYAALTGTHELPQL 369
            ||                    |.||..:.:..||:|.::.:|..|.....:|..|.|...:|..
 Frog   293 IQ--------------------PAPAITYRTIGGILDFYVFVGNSPEQVVMEYLELIGRPYMPAY 337

  Fly   370 FALAYHQSRWNYNDERDVTSVSAKFDEYNIPMDTMWLDIEHTDGKRYFTWDKFKFPHPLAMIKNL 434
            :.|.:|.|||.|:...:|..|..:.....||.|..:.||::.:.|:.||:||.||....:..::|
 Frog   338 WTLGFHLSRWGYSSLDEVKQVVERNRAIGIPYDVQFTDIDYMEEKKDFTYDKVKFKDLPSFAEDL 402

  Fly   435 TELGRHLVVIVDPHIKR----DNNYFFHRDCTDRGYYVKTREG-NDYEGWCWPGAASYPDFFNPV 494
            ...|:..::|:||.|..    |..|..:...|:.|.:|...:| ....|..|||...|||:.|..
 Frog   403 HAHGQRYIIILDPAIANTPLIDGPYLAYERGTNLGVWVNESDGVTPLVGKVWPGDTVYPDYTNEA 467

  Fly   495 VREYYASQYALDKFQTVTADVMLWNDMNEPSVF-------------NGPEITAP-KDLIHYGN-- 543
            ..:::. |..|:.::.|..| .:|.||||.|.|             |.|..|.. ||.:.|..  
 Frog   468 CTKWWV-QECLEFYKQVPYD-GIWIDMNEVSNFVRGSNKGCASNKLNYPPYTPRIKDNVMYSKTL 530

  Fly   544 -------WE-HRDVHNLYGHMHLMGSFAGLQQRDPNQRPFILTRAHFAGSQRYAAIWTGDNFADW 600
                   |. |.|||||||:...:.:...::...|.:|..|.:|:.|||:.:|:..|.|||.|:|
 Frog   531 CMDAKQAWGLHYDVHNLYGYSMALSTEEAIKAVFPGKRSIIFSRSTFAGAGKYSGHWLGDNAANW 595

  Fly   601 SHLQHSVKMCLTEAVAGFSFCGADVGAFFGNPDTELLERWYQTGAFLPFFRAHAHIDTKRREP-- 663
            :.::.::......::.|..:.|||:..||.:...||..||.|.|||.||.|.|.....|.::|  
 Frog   596 NDIKWAIPGMFEFSLFGIPYIGADICGFFDDSSEELCRRWMQVGAFYPFSRNHNAETFKHQDPAS 660

  Fly   664 ----WLFPERTRQVIQNAVIKRYSYLPLWYTAFYELELTGEPVIRPLLAQYPLDKEAFGVDNQLL 724
                .|..:.:|..:.    .||:.||..||.||:....||.|:||||.::..|.|.:|:|||.|
 Frog   661 YGADSLLVKTSRHYLN----IRYTLLPYLYTLFYKAHTKGETVVRPLLHEFYSDPETWGIDNQFL 721

  Fly   725 VQDRLLVRPVMQQGVSKVDVYFPAIDDKKNGDWWYDVDT-YQRQERSGYVSVPVDDFKIPVWQRG 788
            ....||:.|::........||.|   |.|    ||:.:| .|...|...|.:.:.:.||.:..||
 Frog   722 WGPGLLITPILNPNSVNAYVYIP---DAK----WYNYETGTQASWRKQNVDMYIPEDKIGLHVRG 779

  Fly   789 GSIVPKKERQRRASTLML--HDPYTLIICLDRQGKASGSLYLDDEKSYAYRQGQRIHVNYEFA-H 850
            |.|.|   .|:.|:|...  .:|..|||.||....|.|..:.||.:|....: ...|:.|||: .
 Frog   780 GYIFP---TQQPANTTFYSRKNPLGLIIALDDNQAARGDFFWDDGESRGTIE-SGTHILYEFSVS 840

  Fly   851 DQLVNSFVGKPKY---KTLAWIERIVIAGLEKVPSSASITVNGVSQQL-EVLHHDNTVVVRKPGV 911
            :.:::..|...||   ..|.: |.|.|.|::|..|..::...|:.|.. ..:.:|:..|:...|:
 Frog   841 NNILDMVVTHAKYTDPDNLKF-EEIKIYGVQKSVSEVTVKKGGIVQPSGHTVRYDSNKVLVITGL 904

  Fly   912 KM 913
            ::
 Frog   905 QL 906

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2alphaNP_652145.1 GH31_N 224..362 CDD:270212 30/155 (19%)
Glyco_hydro_31 343..792 CDD:279404 149/484 (31%)
GH31_GANC_GANAB_alpha 362..833 CDD:269889 160/508 (31%)
mgamXP_012818887.1 Trefoil 52..95 CDD:395041 1/6 (17%)
NtCtMGAM_N 112..221 CDD:407105 27/180 (15%)
GH31_N 214..330 CDD:270212 30/155 (19%)
GH31_MGAM_SI_GAA 330..693 CDD:269888 112/368 (30%)
Trefoil 915..960 CDD:238059
NtCtMGAM_N 989..1090 CDD:407105
GH31_N 1083..1197 CDD:270212
GH31_MGAM_SI_GAA 1197..1568 CDD:269888
PRK10426 <1479..1660 CDD:236691
Trefoil <1813..1848 CDD:238059
NtCtMGAM_N 1864..1977 CDD:407105
GH31_N 1963..2084 CDD:270212
GH31_MGAM_SI_GAA 2084..2470 CDD:269888
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000251
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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