DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCS2alpha and ganc

DIOPT Version :9

Sequence 1:NP_652145.1 Gene:GCS2alpha / 49953 FlyBaseID:FBgn0027588 Length:924 Species:Drosophila melanogaster
Sequence 2:NP_001107305.1 Gene:ganc / 100135094 XenbaseID:XB-GENE-5928423 Length:918 Species:Xenopus tropicalis


Alignment Length:898 Identity:394/898 - (43%)
Similarity:529/898 - (58%) Gaps:55/898 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VLADGV---DPGNFKTCEQSSFCRRSR-KIQGSGSKYALIPGTLNTYADSLTAD-------LVNK 69
            |..:|:   |...||||.|..|.||.: .:||        |...|...:.|..|       ::|:
 Frog    18 VPVEGILTEDKKKFKTCSQIGFYRRQKLLLQG--------PSPYNADLEMLVVDNGIATLQIINQ 74

  Fly    70 ENHHQFAFKLEALVGSTFRLQIDEKQPLRPRYRVEHALKGPTQAGRIRVQRETDGEIVITSEKNK 134
            :.......::....| .|||:|:|..||:|||.|...:.....|.|:.|.:...|.||:.:....
 Frog    75 DTKVPLQVQIIPCKG-IFRLKINEISPLKPRYEVPDVIVKDLAAERLNVSQRESGCIVLENPNGA 138

  Fly   135 AVIH--GDPFRIDFFENDVLVVSVNAKNWLYFEHLRQKAQEPTSHPAENENQQEQDAAVETPKAA 197
            ..:|  ..||.:....:|.|::|:|::..||||.|    ..|.|..|..|:..|.          
 Frog   139 YKLHITAQPFSVSVTADDKLLLSLNSQGLLYFESL----VSPQSKSATLESDSEV---------- 189

  Fly   198 DTIDDPGAWEENFKSHHDSKPYGPEAVALDFSFPAAKVLFGIPEHADSFILKSTSGTDPYRLYNL 262
             |.|:.|.|.|.|....|.|..||.:|.||.|....:.::|:|||||:..||:|...|.||||||
 Frog   190 -TKDEYGLWSETFGEFVDIKASGPASVGLDVSLHGFEYVYGLPEHADTHRLKNTEHNDAYRLYNL 253

  Fly   263 DVFEYVVDSKMALYGSVPVIYGHGAQRTAGVYWQNAAETWVDIQTSETNVVSSLVNFVSGSQK-- 325
            |||.|....||..|||||::..|...:|.|::|.||:||.|:|.| ......||...|..::|  
 Frog   254 DVFAYKTYDKMGTYGSVPLLLAHKPTQTCGLFWLNASETLVEINT-RAAPQPSLSRSVPDTRKQR 317

  Fly   326 -TPPPAAHFMSESGIVDAFIMLGPKPMDTFKQYAALTGTHELPQLFALAYHQSRWNYNDERDVTS 389
             .|.....:||||||||.|:::||.|.|.|:|||.|||...||.||:|.|||.||||.||.||.:
 Frog   318 AIPQTEVRWMSESGIVDLFLLMGPSPQDVFRQYANLTGFQSLPPLFSLGYHQCRWNYEDEADVEA 382

  Fly   390 VSAKFDEYNIPMDTMWLDIEHTDGKRYFTWDKFKFPHPLAMIKNLTELGRHLVVIVDPHIKRDNN 454
            |...||..|||.|.:||||||||||||||||:.||.:|..|.:.|.:..|.||||.|||||.|.:
 Frog   383 VDLGFDLNNIPYDVIWLDIEHTDGKRYFTWDREKFCNPTRMQEKLKQKKRKLVVISDPHIKVDPD 447

  Fly   455 YFFHRDCTDRGYYVKTREGNDYEGWCWPGAASYPDFFNPVVREYYASQYALDKFQTVTADVMLWN 519
            |..:.:...|||:||.|.|.|:||.||||.:.|.||.||.|:::|::|||||.::..|..:.:||
 Frog   448 YSLYSEAKARGYFVKDRGGQDFEGNCWPGTSCYLDFTNPAVQDWYSAQYALDSYKDSTEVLFVWN 512

  Fly   520 DMNEPSVFNGPEITAPKDLIHYGNWEHRDVHNLYGHMHLMGSFAGLQQRDPNQ-RPFILTRAHFA 583
            ||||||||:.||:|.||:.:||..|||||:|||||....|.:|.||.||...| |||:|||:.||
 Frog   513 DMNEPSVFDSPEMTMPKNAVHYKGWEHRDLHNLYGFYQQMSTFKGLMQRSAGQERPFVLTRSFFA 577

  Fly   584 GSQRYAAIWTGDNFADWSHLQHSVKMCLTEAVAGFSFCGADVGAFFGNPDTELLERWYQTGAFLP 648
            |||||.|:|||||.|||.:|:.||.|.||.:|.|.||||||||.|.|:|:.|||.||||.|||.|
 Frog   578 GSQRYGAVWTGDNKADWEYLKISVPMLLTLSVTGISFCGADVGGFVGDPEPELLIRWYQAGAFQP 642

  Fly   649 FFRAHAHIDTKRREPWLFPERTRQVIQNAVIKRYSYLPLWYTAFYELELTGEPVIRPLLAQYPLD 713
            ||||||..|:||||||||.|....:|:..:.:||:.||.||..||...::.:||:||:..::|..
 Frog   643 FFRAHAIQDSKRREPWLFGEDNTLLIKKVIEERYTLLPFWYLLFYRAHVSAQPVMRPMWVEFPKH 707

  Fly   714 KEAFGVDNQLLVQDRLLVRPVMQQGVSKVDVYFPAIDDKKNGDWWYDVDTYQ--RQERSGYVSVP 776
            .|:|..:.|.::...|||.||:..|||.||:.||.     :|:.|||...|:  |......|.|.
 Frog   708 TESFEEETQYMLGSALLVVPVLAPGVSSVDILFPG-----SGERWYDFRKYECVRGPHRKKVKVT 767

  Fly   777 VDDFKIPVWQRGGSIVPKKERQRRASTLMLHDPYTLIICLDRQGKASGSLYLDDEKSYAYRQGQR 841
            :::  |||:||||||:|...|..|::..|...||.|.:.||.:|.|.|.|:|||..|:.|.| :.
 Frog   768 LNE--IPVFQRGGSIIPLHTRVGRSTGWMDEFPYELRVALDSKGFAEGELFLDDGHSFNYIQ-EN 829

  Fly   842 IHVNYEFAHDQLV---NSFVGKPKYKTLAWIERIVIAGLEKVPSSASITVNGV 891
            :..:.:||..:.|   :|...|.||:..:.:||:.:.|::|.|...::..:||
 Frog   830 VFAHRKFAFQRNVLSSSSADPKGKYQLKSIVERVHVMGVKKQPVEVNVHSSGV 882

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2alphaNP_652145.1 GH31_N 224..362 CDD:270212 65/140 (46%)
Glyco_hydro_31 343..792 CDD:279404 242/451 (54%)
GH31_GANC_GANAB_alpha 362..833 CDD:269889 248/473 (52%)
gancNP_001107305.1 GH31_N 225..355 CDD:270212 61/130 (47%)
Glyco_hydro_31 336..781 CDD:279404 242/451 (54%)
GH31_GANC_GANAB_alpha 355..822 CDD:269889 248/473 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 549 1.000 Domainoid score I252
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D100626at2759
OrthoFinder 1 1.000 - - FOG0000251
OrthoInspector 1 1.000 - - otm49526
Panther 1 1.100 - - O PTHR22762
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1016
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.110

Return to query results.
Submit another query.