DRSC/TRiP Functional Genomics Resources

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Protein Alignment Marf1 and scel

DIOPT Version :10

Sequence 1:NP_724394.2 Gene:Marf1 / 49895 FlyBaseID:FBgn0039972 Length:1305 Species:Drosophila melanogaster
Sequence 2:XP_002931973.1 Gene:scel / 100135239 XenbaseID:XB-GENE-998743 Length:601 Species:Xenopus tropicalis


Alignment Length:360 Identity:67/360 - (18%)
Similarity:122/360 - (33%) Gaps:100/360 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 PCSRPTTTAVTIQRSTGEDGGDKEGHTFAKITEMSDAVTLQITNLDYSLDESHIRSFLLNQLKPI 284
            |.||.|||..||:        ||. .::|.:.. |...|.:....:.|.|:|...|::.:.....
 Frog   134 PGSRTTTTTTTIE--------DKR-KSWAPLNR-STITTTETKPFNQSTDKSATSSWVDSAKSRF 188

  Fly   285 TPVVSLVFEGSSYAKVTVPDLYFAKQVVSNLHRKKIGHKRMLV---SYTRDSSLTEVNTLRCQVA 346
            .         .|..|:..|.       .|::.|..:..::..|   |.|.::.....|       
 Frog   189 Q---------KSEEKIPAPS-------SSSVVRSSVSSEKPKVVPRSPTANTDNRNQN------- 230

  Fly   347 GLLKDVPFNTLPMYKFRELFQSRFKTSISVLDLYKMQDI--CTINSDNNE-----EKFISLNP-- 402
                        :.||.|:..:..|::....:|..:.||  ..|.:....     :|.|.:.|  
 Frog   231 ------------IDKFVEVSSTTIKSTKGTDELDNLIDIKPSAIKTQEKHRTDELDKLIDIKPSA 283

  Fly   403 --------ELVNTLDISPLMEGLQHSVPYCSIHFKKEQHKGWAEQEIEPLPNVFMSISEIQKLIY 459
                    ||.|.:||.|                        :..:::|..|..:...::...|.
 Frog   284 IKAKPRTDELDNLIDIQP------------------------SAIKVKPSSNTILREEDLDDFIQ 324

  Fly   460 ---PLLKVHTGDIPVATLLHCVKEELNVSIMANENGVNLEHLICCVQGIQVRANNFGIKILGWLE 521
               .:..:.:.|.....|:...|.|      |.....||::| ..|:....::|..|..:...:.
 Frog   325 VKGDVTNIRSRDEGNRNLIESRKPE------AKPRSQNLDNL-TDVRNTSNKSNRGGQGLDDLIA 382

  Fly   522 INKEMQSGTFNASS-NTCSLTASDRTNCGSYFKNS 555
            :..:...||...|| ||.::|:...|...:|.:|:
 Frog   383 VTGDTNKGTVKPSSTNTSNVTSRSSTTSYTYTENN 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Marf1NP_724394.2 RRM2_LKAP 253..337 CDD:409701 14/86 (16%)
MARF1_LOTUS 341..520 CDD:437519 31/198 (16%)
LabA_like_C 560..631 CDD:472713
LabA_like_C 636..710 CDD:472713
LabA_like_C 723..794 CDD:472713
LOTUS 805..872 CDD:193585
scelXP_002931973.1 LIM 534..592 CDD:259829
Blue background indicates that the domain is not in the aligned region.

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