DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cht4 and chia.1

DIOPT Version :9

Sequence 1:NP_524962.2 Gene:Cht4 / 49815 FlyBaseID:FBgn0022700 Length:462 Species:Drosophila melanogaster
Sequence 2:NP_998215.1 Gene:chia.1 / 406323 ZFINID:ZDB-GENE-040426-1994 Length:455 Species:Danio rerio


Alignment Length:490 Identity:167/490 - (34%)
Similarity:245/490 - (50%) Gaps:65/490 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LVSIWALAALCLCLG-QVASSEKLLNCYWGTWANYRPGDGKFTPSDIDPSLCTHISYTFFGISDA 66
            :..:..||.|.:.|. |:.||.||: ||...|:.||||:|||.|.:|||.||||:.|....||..
Zfish     1 MTKLTILAGLGILLSLQIVSSTKLV-CYMTNWSQYRPGNGKFLPENIDPFLCTHVVYALATISYD 64

  Fly    67 GEFKSLDTWLDMDDGLGFISQTIALKQRNPNLKILAVVGGWNEGSTKYSAMAADPAKRATFVSTS 131
            .:..::: |.|:|    .......||:.||.||....|||...|.:.|..|.|.|..|..|:..:
Zfish    65 NQITTIE-WNDVD----LYKSMNELKKVNPALKTQLSVGGLVNGVSPYINMVATPENRKAFIRNA 124

  Fly   132 LAFIQQYSFDGLDLDWEYPGQRGGSEADRENFVTLLREIKETYDQYGLE-------LGIAVGASE 189
            |.|::.:.|||:|:||:|||..|....|::...|.::|:::..:|..::       |.|.|.|.:
Zfish   125 LLFLRLHEFDGMDIDWQYPGHNGSPPQDKQRLTTFIKEMRDAIEQEAIDTKKTPLLLSIKVSAIK 189

  Fly   190 KSASISYDIPAISQHLTFINVMTYDFHMALDGYLGLNAPL------------PEVAESIDYWLSH 242
            .:...:|:...::..:.|:.:|:||:|...|...|.|:||            ..:..|:::||..
Zfish   190 TTIENAYEAKEVASLVDFVTIMSYDYHGHWDPITGHNSPLFRSSFDTGSIVHHNINSSLEFWLGS 254

  Fly   243 GAPAEKLILGIGFYGHSYQMSDSSQNWPGAACIGPGTAGVYTRENGFLGYHEICLN------NWQ 301
            ||||::|:||:..||.::.:| :||...||...||..||.||||.||..|:|||..      :| 
Zfish   255 GAPADRLLLGLPTYGRTFMLS-TSQTGLGAPANGPADAGPYTREAGFWSYYEICPMESSVPIHW- 317

  Fly   302 TVFDQENGAPYAFQGDQWIGYDNPESIQLKMQLVESRNLGGAMMWSIETDDFRG-LC-GESYPLL 364
               ..|...|||.||..|:|:||.|||..|:|.:.|..||||.:|:::.|||.| .| ..:|||:
Zfish   318 ---IDEQMVPYAVQGRAWVGFDNQESITAKVQWLNSLKLGGASVWTLDFDDFAGRFCYNGAYPLV 379

  Fly   365 KTMNRALGREVSGGSGGGGGGGGEGSVTPAPTAAPTSSPTPAPTPGGGSGGNECA--QDGFFVLE 427
            ..:..:||                  ..|.||.      ||.||.......:.|.  .||.:...
Zfish   380 NHLRNSLG------------------FPPKPTT------TPRPTTTADPINSFCVGKPDGLYPHP 420

  Fly   428 SDCNKFYQCVGGVRYDFQCGAGLCFNTITLNCDWP 462
            :|.:|::.|..|..|..||..||.|......||||
Zfish   421 TDASKYFHCFRGNTYLQQCQPGLVFVDACKCCDWP 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht4NP_524962.2 GH18_chitolectin_chitotriosidase 26..371 CDD:119351 132/371 (36%)
Glyco_18 28..351 CDD:214753 124/347 (36%)
CBM_14 421..462 CDD:279884 14/40 (35%)
chia.1NP_998215.1 Glyco_18 23..364 CDD:214753 126/351 (36%)
GH18_chitolectin_chitotriosidase 24..386 CDD:119351 133/372 (36%)
ChtBD2 407..455 CDD:214696 15/47 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170592088
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 314 1.000 Inparanoid score I2545
OMA 1 1.010 - - QHG58170
OrthoDB 1 1.010 - - D264489at33208
OrthoFinder 1 1.000 - - FOG0000107
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X91
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.910

Return to query results.
Submit another query.