DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn42Dd and Serpind1

DIOPT Version :10

Sequence 1:NP_001163067.1 Gene:Spn42Dd / 49808 FlyBaseID:FBgn0028988 Length:372 Species:Drosophila melanogaster
Sequence 2:NP_077358.1 Gene:Serpind1 / 79224 RGDID:619854 Length:479 Species:Rattus norvegicus


Alignment Length:372 Identity:103/372 - (27%)
Similarity:189/372 - (50%) Gaps:32/372 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 IYQLLSKSHT-NQNLVVSPVSIETILSMVFMGAEGSTAKELQSALGLPSEDKEAVAARYGA---- 80
            :|::|....| :.|:.::||.|.|.:.|:.:|..|.|.:|:.|.|..  :|....:::|..    
  Rat   117 LYRVLKDQATSSDNIFIAPVGISTAMGMISLGLRGETHEEVHSVLHF--KDFVNASSKYEVTTIH 179

  Fly    81 -----LLNDLQGQEEGPILKLANRIYVNDQYSLNQNYNLAVREPFKSEAESISLTNGPVAAERIN 140
                 |.:.|..:..|..|:..|.:|:..|:.:.:::..|:||.:.:||:....:: |....:.|
  Rat   180 NLFRKLTHRLFRRNFGYTLQSVNDLYIQKQFPIREDFKAAMREFYFAEAQEADFSD-PAFISKAN 243

  Fly   141 QWVLDQTSGKIKGMIDPGSMTSDVKALLVNAIYFKGQWESKFDPAKTRASTFQVTANKSVPVQMM 205
            ..:|..|.|.||..::  :..|..:.:::|.|||||.|.:||....|....|::...:.|.|.||
  Rat   244 SHILKLTKGLIKEALE--NTDSATQMMILNCIYFKGAWMNKFPVEMTHNHNFRLNEREVVKVSMM 306

  Fly   206 AQMGTFRANYFRDLDAQVIELPYLNSNLSMTIFLPREVEGLSALEEKIV-----GFARPLVAKEV 265
            ...|.|.|...::||..:::|.|: ..:||.|.:||::.|:..||.::.     .:.:.:..:..
  Rat   307 QTKGNFLAANDQELDCDILQLEYV-GGISMLIVIPRKLSGMKTLEAQLTPQVVERWQKSMTNRTR 370

  Fly   266 YLKLPKFKIEFRDELKETLEKLGIRELFTDKSDLSGLFADKSGGKVSQVSHKAFLEVNEEGAEAA 330
            .:.|||||:|....|.|.|:.:||.:||....::||:...:.  .:....|::.:.|||||.:||
  Rat   371 EVLLPKFKLEKNYNLVEVLKSMGITKLFNKNGNMSGISDQRI--IIDLFKHQSTITVNEEGTQAA 433

  Fly   331 GATSVA---VTNRAGFSTFLMADHPFAFVIRDANT--IYFQGRVVSP 372
            ..|:|.   ::.:..|:    .|.||.|::.:..|  :.|.|||.:|
  Rat   434 AVTTVGFMPLSTQVRFT----VDRPFLFLVYEHRTSCLLFMGRVANP 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn42DdNP_001163067.1 serpin42Dd-like_insects 12..372 CDD:381070 102/370 (28%)
Serpind1NP_077358.1 serpinD1_HCF2 33..479 CDD:381004 103/372 (28%)
2 X 11 AA approximate repeats, Asp/Glu-rich (acidic) (hirudin-like) 55..79
Glycosaminoglycan-binding site. /evidence=ECO:0000250 172..192 3/19 (16%)
Blue background indicates that the domain is not in the aligned region.

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