DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28F and Serpinb12

DIOPT Version :9

Sequence 1:NP_524957.2 Gene:Spn28F / 49807 FlyBaseID:FBgn0028987 Length:375 Species:Drosophila melanogaster
Sequence 2:XP_038946584.1 Gene:Serpinb12 / 304692 RGDID:1566382 Length:423 Species:Rattus norvegicus


Alignment Length:417 Identity:134/417 - (32%)
Similarity:217/417 - (52%) Gaps:62/417 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RFADDFYQLLAKENAANNLISSPLSVEIALSMAYMGARAKTAQEMRNVL---KLPDDKK----EV 73
            :|..||:|.::|::|..|:...|||:..|..|..:|||..:||::..||   :||.|::    |.
  Rat    10 KFCFDFFQEISKDDAHKNIFVCPLSLSAAFGMVRLGARGDSAQQIDEVLHFNELPKDERKEPSEP 74

  Fly    74 AAKYKDLLSKLEGREKVA------------------------------------TLSLANRIYVN 102
            ::|.|...|.|||:::..                                    |||:|||:|..
  Rat    75 SSKSKASDSSLEGQKQTTASQGQQVSGESTNEHRLLGCHFGKLLSRIDRDKAHYTLSMANRLYGE 139

  Fly   103 KKFQLVPSYNQMVKDSFMAEAEAIDI-VDPNKASSIVNNWVDNQTRGKIKDLVSSNDMSKMELIV 166
            ::|.:.|.|:..:.:.:....|::|. .|..|:...:|.||::|::||||:|.....:....::|
  Rat   140 QEFPICPEYSDDITEFYHTTIESVDFQKDTEKSREEINFWVESQSQGKIKELFDKEAIDNSTVLV 204

  Fly   167 L-NAIYFKGQWEYKFNPKLTKKRNFRVSDQKSVPVEMMSLFQSFRAAHDSELGAKIIELPYRNSS 230
            | ||:|||.:||.:|:.:.|....|.:|:.:...|:||:....||.....||.|:|:|:.|....
  Rat   205 LVNAVYFKAKWEKEFDSENTVDAPFCLSENEKKTVKMMNQKGQFRIGFIEELQAQILEMKYTTGK 269

  Fly   231 LSMLIFLP----DQVDGLSELEKKIVGFK-------PKLSKMDVTLRLPKFKIEFFAQLNKVLVA 284
            ||||:.||    |.|..|.||||||...|       ..:|:..|.:..|:|.:|....||.||..
  Rat   270 LSMLVLLPSSSEDNVKSLQELEKKINHEKLLAWSNPENMSEKPVAISFPQFIMEDSYDLNSVLQD 334

  Fly   285 MGIQDAFE-KSADFKDLVENSNVHVKKVIHKAFIEVNEEGAEAAAATALLFVRYSMPMPSSQMVF 348
            |||:|.|: ..||...:.::.::|:.||:||.|:||:|.|.:||||:..:....::|   |::.|
  Rat   335 MGIRDVFDGTKADLTGISKSPSLHLSKVVHKTFVEVDEMGTQAAAASGAVVAEKALP---SRVEF 396

  Fly   349 NADHPFAYVIRDR--ETIYFQGHFVKP 373
            ||:.||.:.||..  :::.|.|....|
  Rat   397 NANRPFLFFIRHNGTQSLLFCGRVYSP 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28FNP_524957.2 SERPIN 14..370 CDD:238101 133/412 (32%)
Serpinb12XP_038946584.1 serpinB12_yukopin 1..423 CDD:381037 133/415 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X28
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.930

Return to query results.
Submit another query.