DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28F and srp-2

DIOPT Version :9

Sequence 1:NP_524957.2 Gene:Spn28F / 49807 FlyBaseID:FBgn0028987 Length:375 Species:Drosophila melanogaster
Sequence 2:NP_503318.1 Gene:srp-2 / 178586 WormBaseID:WBGene00005643 Length:359 Species:Caenorhabditis elegans


Alignment Length:357 Identity:105/357 - (29%)
Similarity:188/357 - (52%) Gaps:15/357 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 DF-YQLLAKENAANNLISSPLSVEIALSMAYMGARAKTAQEMRNVLKLPDDKKEVAAKYKDLLSK 83
            || .:|||....:.:::.||||:.:.|::.:.||...|.:|:.:||    ....:..::..|:..
 Worm    10 DFALKLLATLPHSGSVVLSPLSISLGLALIHAGACGSTQKELEDVL----GGSRIFEEFSGLMEA 70

  Fly    84 LEGREKVATLSLANRIYVNKKFQLVPSYNQMVKDSFMAEAEAIDIVDPNKASSIVNNWVDNQTRG 148
            :...:......:.||::||:.:.:...|.:.|:..:.|..|::|.....:|:..:|.:|:|.|.|
 Worm    71 VGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAAKTMNTFVENHTNG 135

  Fly   149 KIKDLVSSNDMSKMELIVLNAIYFKGQWEYKFNPKLTKKRNFRVSDQKSVPVEMMSLFQSFRAAH 213
            |||||:.::..:.....::||:|||..|:.||..:.|..|.|..|:.:|..:..::.....| .:
 Worm   136 KIKDLIPADSANNAFAFLVNAMYFKADWQSKFAKESTTGREFFTSEAESRQIPFLTELDEHR-DY 199

  Fly   214 DSELGAKIIELPYRNSSLSMLIFLPDQVDGLSELEKKIVG-----FKPKLSKMDVTLRLPKFKIE 273
            ..::..:::.|.|.:...::.||||.|..||.:..:||.|     ....|....|::::||||||
 Worm   200 TEDVLFQVLSLKYADPKFTLAIFLPKQRFGLVDALEKINGEYIQNLLNDLKSSYVSVQIPKFKIE 264

  Fly   274 FFAQLNKVLVAMGIQDAFEKSADFKDLVENSNVHVKKVIHKAFIEVNEEGAEAAAATALLFVRYS 338
            ....|.:.|.|:||::.|.:.||...:.:  .|.:...||||.|||:|:|..||||:|.. |:..
 Worm   265 KELDLKETLEAIGIKEIFAEGADLSGIAD--KVFISSGIHKAIIEVDEDGTTAAAASAFK-VQLE 326

  Fly   339 MPMPSSQMVFNADHPFAY-VIRDRETIYFQGH 369
            |.:.:....|.|||||.: |:.:..|::...|
 Worm   327 MMIMAEPTQFVADHPFLFAVLFENHTLFLGVH 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28FNP_524957.2 SERPIN 14..370 CDD:238101 105/357 (29%)
srp-2NP_503318.1 serpinL_nematode 7..358 CDD:381047 104/355 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H76659
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3483
SonicParanoid 1 1.000 - - X28
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.960

Return to query results.
Submit another query.