DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn88Ea and Spn42Db

DIOPT Version :9

Sequence 1:NP_524954.2 Gene:Spn88Ea / 49804 FlyBaseID:FBgn0028984 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_610244.2 Gene:Spn42Db / 35599 FlyBaseID:FBgn0033112 Length:388 Species:Drosophila melanogaster


Alignment Length:394 Identity:103/394 - (26%)
Similarity:187/394 - (47%) Gaps:44/394 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KGQQNFAVSMLNVIRQSTPNENVFFSPYSTYHALLLAYFGSS--GDTEKELAKVLHLDWADSKEV 100
            :|.:.||:.:.:.:.:::...|:.:||.|.:.:..:...|:|  ..|.||:.:.|.....::::|
  Fly     8 QGLEQFALCLHDHLCRASAGLNIIYSPLSIHISAAMLRMGTSEGSATAKEMDEGLRFGGLEAQQV 72

  Fly   101 VRSAYILEKMNRKERQSKMPLEFSSADRIFFANDLHVTE----CARNRLAEEVQQIDFKSQTEES 161
            ..|..::.|...:.:..||      |:.::....|.|.|    ....:...:..:|||.|  |::
  Fly    73 AESFGVVLKSYEQCQVLKM------ANGLYVMKGLQVDEQFGHILEQKFRSKPMEIDFGS--EQA 129

  Fly   162 RKQINDWIAKQTHDQIRNMLSADEITPRTRLVLANAAYLKGQWLSQFKTEKTVPMPFYTS--PSN 224
            ...||.|:..||::.|::::....:|..:||.|.|..:.||:|...|..::|....|:.|  |:.
  Fly   130 ASIINKWVESQTNNLIKDIIGPRVLTKDSRLCLVNGIHFKGEWSISFNEKETREEDFFGSDRPTR 194

  Fly   225 YSLVSMMQQKGTFLLNVDEQLRAHVLQLPYRTVFESQEKEDSSPDENSDISMVLILPPFNSN--S 287
               |.||.....|...|.....|..|::.|..               .:::|:::||...||  |
  Fly   195 ---VRMMHVCENFFFAVLPMFEATALRMNYSA---------------CNLAMIILLPDEKSNLTS 241

  Fly   288 LEDVLSRLNADSLDDSLKQAMPREIEVSLPKFEFEQRLELNPILAKMGVSKMFDESVATFDDLTS 352
            ||..||.::.:.:..::..   .:::|.:|.|..|.:.||:.:|..||::::|.........|.|
  Fly   242 LEKKLSDISLEVVSSAMNL---EKVDVKIPSFTAEFQQELSQVLMLMGMNRIFSGQAELGGMLQS 303

  Fly   353 -ETISIGDSKHVAKIKVDEEGSTAAAAT-VLFTYRS--ARPVEPAKFECNHPFLFVIYDRTSRSI 413
             |::.:....|.|.|:::|.|:.||||| .:.|:||  ||...|..|..|.||.:.|.|.| ..:
  Fly   304 EESLFVSQIVHKAFIEINEVGTEAAAATAAVATFRSMPARQGPPKVFHANRPFFYAIKDNT-HGL 367

  Fly   414 LFTG 417
            ||.|
  Fly   368 LFAG 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn88EaNP_524954.2 SERPIN 39..419 CDD:238101 103/393 (26%)
Spn42DbNP_610244.2 SERPIN 12..373 CDD:238101 102/390 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446287
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D140751at6656
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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