DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn88Ea and Serpina3j

DIOPT Version :9

Sequence 1:NP_524954.2 Gene:Spn88Ea / 49804 FlyBaseID:FBgn0028984 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_001094942.1 Gene:Serpina3j / 238395 MGIID:2182843 Length:420 Species:Mus musculus


Alignment Length:448 Identity:109/448 - (24%)
Similarity:195/448 - (43%) Gaps:66/448 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LSISLMAVLPAIALAGLCGVEPDAG-------------LLDQRLNLYKGQQNFAVSMLNVIRQST 55
            |.:.:..:.||:    ||..|...|             .||. |.|.....:||.|:...:....
Mouse     7 LGLLMAGICPAV----LCCPEDTLGKHTPVQKDRDHETQLDS-LTLASINTDFAFSLYKKLALKN 66

  Fly    56 PNENVFFSPYSTYHALLLAYFGSSGDTEKELAKVLHLDWADSKEV-VRSAY--ILEKMNRKERQS 117
            |::|..|||.|...||.....|:.|:|.:|:.:.|..:..::.|. :...:  :|:::::...| 
Mouse    67 PHKNFVFSPLSITIALASLSLGAKGNTLEEILEGLKFNLTETPEADIHQGFGHLLQRLSQPGDQ- 130

  Fly   118 KMPLEFSSADRIFFANDLHV----TECARNRLAEEVQQIDFKSQTEESRKQINDWIAKQTHDQIR 178
               ::.|:.:.:.....|.:    .|.||.....||...||: |..|:||.:||:::.||...|:
Mouse   131 ---VQISTGNSMVVEKHLQILAEFKEKARALYHTEVFTADFQ-QPREARKLLNDYVSNQTQGMIK 191

  Fly   179 NMLSADEITPRTRLVLANAAYLKGQWLSQFKTEKTVPMPFY---TSPSNYSLVSMMQQKGTFLLN 240
            .::|  ::..||.:|:.|.|...|:|...|...:|....|.   .:|...|::.|.:.:..:.. 
Mouse   192 ELVS--DLEERTSMVMTNFALFNGKWNMTFDPYETFMGTFIEDRRTPVKVSMMKMKELRAPYFR- 253

  Fly   241 VDEQLRAHVLQLPYRTVFESQEKEDSSPDENSDISMVLILPPFNSNSLEDVLSRLNADSLDDSLK 305
             ||:::..|::|.|:                .:...:.|||  :...::.|.:.|...:|....|
Mouse   254 -DEKMKCTVVELNYK----------------GNGKAMFILP--DQGKMKQVEASLQPATLRGWRK 299

  Fly   306 QAMPREI-EVSLPKFEFEQRLELNPILAKMGVSKMFDESVATFDDLT----SETISIGDSKHVAK 365
            ...||.| |:.||||...:...|..||.::|:.::|    :|..||:    .:.:.:....|.|.
Mouse   300 SLRPRMIDELYLPKFSISKNYRLENILPELGIKEVF----STQADLSGISGGKDVRVSRMFHSAA 360

  Fly   366 IKVDEEGSTAAAAT-VLFTYRSARPVEPAKFECNHPFLFVIYDRTSRSILFTGIYRDP 422
            :.:.|.|:.|.|.| ..:.:.|.:. .|.....|.||||.:....|.:|.|.|...:|
Mouse   361 LDMTETGTEARATTRDKYDFLSTKS-NPTVVNLNTPFLFCVLHSDSENIDFMGKINNP 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn88EaNP_524954.2 SERPIN 39..419 CDD:238101 97/395 (25%)
Serpina3jNP_001094942.1 serpinA3_A1AC 37..417 CDD:381019 101/412 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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