DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn88Ea and Serpina3k

DIOPT Version :9

Sequence 1:NP_524954.2 Gene:Spn88Ea / 49804 FlyBaseID:FBgn0028984 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_035588.2 Gene:Serpina3k / 20714 MGIID:98377 Length:418 Species:Mus musculus


Alignment Length:451 Identity:126/451 - (27%)
Similarity:202/451 - (44%) Gaps:66/451 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ISLMAVLPAIALAGLCGV-----------------EPDAGLLDQRLNLYKGQQNFAVSMLNVIRQ 53
            ::.:..:..|.:||:|..                 ..|.|..|..|.|.....:||.|:...:..
Mouse     1 MAFIVAMGMILMAGICPAVLCFPDGTKEMDIVFHEHQDNGTQDDSLTLASVNTDFAFSLYKKLAL 65

  Fly    54 STPNENVFFSPYSTYHALLLAYFGSSGDTEKELAKVLHLDWADSKEV-VRSAY--ILEKMNRKER 115
            ...::|:.|||.|...||.|...|:.|.|.:|:.:.|..:..::.|. :...:  :|:.:::.|.
Mouse    66 KNQDKNIVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLTETPEADIHQGFGNLLQSLSQPED 130

  Fly   116 QSKMPLEFSSADRIFFANDLHVT----ECARNRLAEEVQQIDFKSQTEESRKQINDWIAKQTHDQ 176
            |.::.:    .:.:|...||.:.    |..|.....|....||:..| |::..|||:::.||...
Mouse   131 QDQINI----GNAMFIEKDLQILAEFHEKTRALYQTEAFTADFQQPT-EAKNLINDYVSNQTQGM 190

  Fly   177 IRNMLSADEITPRTRLVLANAAYLKGQWLSQFKTEKTVPMPFYTSPSNYSLVSMMQQKGTFLLNV 241
            |:.::|  |:...|.:||.|..|.||:|...|..:.|....||........|.||:.|   ||..
Mouse   191 IKKLIS--ELDDGTLMVLVNYIYFKGKWKISFDPQDTFESEFYLDEKRSVKVPMMKMK---LLTA 250

  Fly   242 ----DEQLRAHVLQLPYRTVFESQEKEDSSPDENSDISMVLILPPFNSNSLEDVLSRLNADSLDD 302
                ||:|...||:|.|                ..:.|.:||||  :...::.|.:.|..::|..
Mouse   251 RHFRDEELSCSVLELKY----------------TGNASALLILP--DQGRMQQVEASLQPETLRK 297

  Fly   303 SLKQAMPREI-EVSLPKFEF--EQRLELNPILAKMGVSKMFDESVATFDDLTSETISIGDSKHVA 364
            ..|.....:| |::||||..  :.||| ..:|.:||:.::|.|.........::.:|:....|.|
Mouse   298 WRKTLFSSQIEELNLPKFSIASDYRLE-EDVLPEMGIKEVFTEQADLSGITEAKKLSVSQVVHKA 361

  Fly   365 KIKVDEEGSTAAAAT-VLFTYRSARPVEPAKFEC-NHPFLFVIYDRTSRSILFTGIYRDPK 423
            .:.|.|.|:.||||| |:...|.|  |.||  .| |.|||.|||..:::||||.....:||
Mouse   362 VLDVAETGTEAAAATGVIGGIRKA--VLPA--VCFNRPFLIVIYHTSAQSILFMAKVNNPK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn88EaNP_524954.2 SERPIN 39..419 CDD:238101 115/395 (29%)
Serpina3kNP_035588.2 SERPIN 57..417 CDD:214513 113/392 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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