DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn88Ea and srp-2

DIOPT Version :9

Sequence 1:NP_524954.2 Gene:Spn88Ea / 49804 FlyBaseID:FBgn0028984 Length:427 Species:Drosophila melanogaster
Sequence 2:NP_503318.1 Gene:srp-2 / 178586 WormBaseID:WBGene00005643 Length:359 Species:Caenorhabditis elegans


Alignment Length:398 Identity:108/398 - (27%)
Similarity:178/398 - (44%) Gaps:65/398 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 QQNFAVSMLNVIRQSTPNENVFFSPYSTYHALLLAYFGSSGDTEKELAKVLHLDWADSKEVVRSA 104
            |.:||:.:|..:..|   .:|..||.|....|.|.:.|:.|.|:|||..||    ..|:.....:
 Worm     8 QTDFALKLLATLPHS---GSVVLSPLSISLGLALIHAGACGSTQKELEDVL----GGSRIFEEFS 65

  Fly   105 YILEKMNRKERQSKMPLEFSSADRIFF--ANDLH--VTECARNRLAEEVQQIDFKSQTEESRKQI 165
            .::|.:...:.    .:|....:|:|.  |..:|  ..|..........:.:|| ||||::.|.:
 Worm    66 GLMEAVGDTDN----GVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDF-SQTEQAAKTM 125

  Fly   166 NDWIAKQTHDQIRNMLSADEITPRTRLVLANAAYLKGQWLSQFKTEKTVPMPFYTSPSNYSLVSM 230
            |.::...|:.:|::::.||... .....|.||.|.|..|.|:|..|.|....|:||         
 Worm   126 NTFVENHTNGKIKDLIPADSAN-NAFAFLVNAMYFKADWQSKFAKESTTGREFFTS--------- 180

  Fly   231 MQQKGTFLLNVDEQLRAHVLQLPYRTVFESQEKEDSSPD--------ENSDISMVL-ILPPFNSN 286
                           .|...|:|:.|  |..|..|.:.|        :.:|....| |..|....
 Worm   181 ---------------EAESRQIPFLT--ELDEHRDYTEDVLFQVLSLKYADPKFTLAIFLPKQRF 228

  Fly   287 SLEDVLSRLNADSLDDSLKQAMPREIEVSLPKFEFEQRLELNPILAKMGVSKMFDESVATFDDLT 351
            .|.|.|.::|.:.:.:.|.......:.|.:|||:.|:.|:|...|..:|:.::|.|..    ||:
 Worm   229 GLVDALEKINGEYIQNLLNDLKSSYVSVQIPKFKIEKELDLKETLEAIGIKEIFAEGA----DLS 289

  Fly   352 --SETISIGDSKHVAKIKVDEEGSTAAAATVLFTYRSARPV--EPAKFECNHPFLF-VIYDRTSR 411
              ::.:.|....|.|.|:|||:|:|||||:. |..:....:  ||.:|..:||||| |:::..: 
 Worm   290 GIADKVFISSGIHKAIIEVDEDGTTAAAASA-FKVQLEMMIMAEPTQFVADHPFLFAVLFENHT- 352

  Fly   412 SILFTGIY 419
              ||.|::
 Worm   353 --LFLGVH 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn88EaNP_524954.2 SERPIN 39..419 CDD:238101 108/396 (27%)
srp-2NP_503318.1 serpinL_nematode 7..358 CDD:381047 108/396 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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