DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn55B and AT1G62160

DIOPT Version :9

Sequence 1:NP_524953.1 Gene:Spn55B / 49803 FlyBaseID:FBgn0028983 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_176407.2 Gene:AT1G62160 / 3767608 AraportID:AT1G62160 Length:220 Species:Arabidopsis thaliana


Alignment Length:168 Identity:47/168 - (27%)
Similarity:76/168 - (45%) Gaps:37/168 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 GCTALEMPYQ------DSDLSMFVLLPQERTGIYALAEKL-KTVNLVDL---ADKLTVEEVHVKF 269
            |...|.:||:      :.:.||:..||.::..:..|.::: .|...:|.   .:::.|:|..:  
plant    69 GFKVLRLPYRQGRDNTNRNFSMYFYLPDKKGELDDLLKRMTSTPGFLDSHTPRERVEVDEFRI-- 131

  Fly   270 PKFKVDYSLELAEKLKQLGITKMFTDQAEFSNLLESPEGVFVSKVLHKATIEVNEEGTEAAAATG 334
            ||||:::..|.:.......|...|                     ..||.||::||||||||||.
plant   132 PKFKIEFGFEASSVFSDFEIDVSF---------------------YQKALIEIDEEGTEAAAATA 175

  Fly   335 MIMMTRMMTF--PLQFQADRPFLYVIWNKK--NILFAG 368
            .:.......|  .|.|.||.|||::|..::  .:||||
plant   176 FVDNEDGCGFVETLDFVADHPFLFLIREEQTGTVLFAG 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn55BNP_524953.1 SERPIN 13..370 CDD:238101 47/168 (28%)
AT1G62160NP_176407.2 SERPIN <43..218 CDD:294093 47/168 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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