DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn55B and srp-8

DIOPT Version :9

Sequence 1:NP_524953.1 Gene:Spn55B / 49803 FlyBaseID:FBgn0028983 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_001309497.1 Gene:srp-8 / 191960 WormBaseID:WBGene00005649 Length:372 Species:Caenorhabditis elegans


Alignment Length:373 Identity:105/373 - (28%)
Similarity:175/373 - (46%) Gaps:20/373 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EF-ARGGARFTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGSQGETADEIAKALHFVSNFPP 70
            || ::..|.|.   .:||......::.||||.:|...:...:..::|||..:|...| |.:....
 Worm     9 EFLSKSEAEFA---LKLLHQQDHSQSFVFSPIAISLALYSLYEAARGETRSQIHDCL-FKNATDG 69

  Fly    71 EVAQTFQFV---LEKYRNSNLLRVANKLYVQEGKQLKPAYQSAIKEQYHSEAESINFALNDAAAQ 132
            |:...|..|   |...:....:::.|.:..:.|.:.:......:|..|:.|..|.:........:
 Worm    70 EMVTHFSNVSTALSAMKKDPQVKICNHIICRNGIKTESLCLDKVKLLYNCEVSSHDLDNEKETIK 134

  Fly   133 AINAWVNAKTQGKITELVSADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKI 197
            .||..:...|.|.|.::.:..|...:..:|.|:|..|:..|.:||.:..|.:..|:........|
 Worm   135 TINKLIRENTDGHIKKINTKISIDKDQVVVFLSAACFEAQWQNKFHKLSTSKKEFFCTANSHRNI 199

  Fly   198 NYMNQKAKFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKTV---NLVDLADK 259
            .:::.... |..:.|:.....|.:||.||...|.:.||:|:.|   |||.|||:   .:.:|...
 Worm   200 KFLHATGA-NRKYCENDKFQVLSLPYTDSSFEMTIFLPKEQFG---LAEALKTLGTSTIQELKSN 260

  Fly   260 LTVEEVHVKFPKFKVDYSLELAEKLKQLGITKMFTDQAEFSNLLESPEGVFVSKVLHKATIEVNE 324
            ::...|:|:.|.::.:..::|...|:.:||||:..:.|...|..|:   |.:|:.:|||.|||||
 Worm   261 VSNYLVNVQIPIWRNETEIDLNSTLQAIGITKILNESAYIGNFAEN---VHISEFIHKAIIEVNE 322

  Fly   325 EGTEAAAATGMIMMT-RMMTFPLQ-FQADRPFLYVIWNKKNILFAGAF 370
            .||..|..|.:|... |..|..:: |.||.||||.|..|.:|||.|.|
 Worm   323 NGTSPATNTKVITKRWREETGEIRDFIADHPFLYTIHYKNSILFMGVF 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn55BNP_524953.1 SERPIN 13..370 CDD:238101 102/364 (28%)
srp-8NP_001309497.1 serpinL_nematode 14..370 CDD:381047 102/366 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 1 1.000 - - mtm4841
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.830

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