DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn55B and srp-6

DIOPT Version :9

Sequence 1:NP_524953.1 Gene:Spn55B / 49803 FlyBaseID:FBgn0028983 Length:374 Species:Drosophila melanogaster
Sequence 2:NP_504890.1 Gene:srp-6 / 179125 WormBaseID:WBGene00005647 Length:375 Species:Caenorhabditis elegans


Alignment Length:363 Identity:120/363 - (33%)
Similarity:195/363 - (53%) Gaps:30/363 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 LLSAGGLKENVVFSPFSIQTCIALAFAGSQGETADEIAKAL-----------HFVSNFPPEVAQT 75
            ||....|.|:.||||.||...::|....::|||.|||.|||           || ||....:   
 Worm    24 LLRQQNLTESFVFSPLSIALALSLVHVAAKGETRDEIRKALLNGATDEELEQHF-SNISAGL--- 84

  Fly    76 FQFVLEKYRNSNLLRVANKLYVQEGKQLKPAYQSAIKEQYHSEAESINFALNDAAAQAINAWVNA 140
              .|.||....|   |||.::.::...:|..|.:.:|:.|::.|..:||...:|:|:|||.:|:.
 Worm    85 --LVAEKGTEVN---VANHIFSRKTFTIKKLYLNDVKKLYNAGASQLNFEDQEASAEAINNFVSE 144

  Fly   141 KTQGKITELVSADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYMNQKAK 205
            .|:|.|.::::.||.|:....||.||.:||.:|..||.:|.|.:..|:..|..:.:..:::.: .
 Worm   145 NTKGHIKKIINPDSISEELVAVLTNAFYFKANWQTKFKKESTYKREFFSSENSKRETEFLHSR-N 208

  Fly   206 FNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKTVNLVDLADKLTVEEVHVKFP 270
            .|..:.|:.....|.:||:|:..::.:.||:.|.|:....:.|.:|.:..|....:...|::..|
 Worm   209 SNRKYSENGQFQVLSLPYKDTSFALSIFLPKTRFGLSEALQNLDSVTIQQLMSNTSNTLVNIAMP 273

  Fly   271 KFKVDYSLELAEKLKQLGITKMFTDQAEFSNLLESPEGVFVSKVLHKATIEVNEEGTEAAAATGM 335
            |:|::.:|.|...|..:||.|.|||.|:.||.   .:|:::|:..|||.|||:|:||.||||| .
 Worm   274 KWKIETALGLNRALMAVGIEKAFTDSADLSNF---ADGIYISQAAHKALIEVDEDGTVAAAAT-T 334

  Fly   336 IMMTRMMTF-----PLQFQADRPFLYVIWNKKNILFAG 368
            |..:....|     |::|.||.|||:::....:.||.|
 Worm   335 ISFSLTSVFIPAEEPIEFTADHPFLFILSKDNHPLFIG 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn55BNP_524953.1 SERPIN 13..370 CDD:238101 120/363 (33%)
srp-6NP_504890.1 serpinL_nematode 16..374 CDD:381047 120/363 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 1 1.000 - - mtm4841
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.830

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