DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn55B and LOC100909605

DIOPT Version :9

Sequence 1:NP_524953.1 Gene:Spn55B / 49803 FlyBaseID:FBgn0028983 Length:374 Species:Drosophila melanogaster
Sequence 2:XP_006240581.2 Gene:LOC100909605 / 100909605 RGDID:6502633 Length:410 Species:Rattus norvegicus


Alignment Length:357 Identity:111/357 - (31%)
Similarity:186/357 - (52%) Gaps:23/357 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 FTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGSQGETADEIAKALHFVSNFPP--EVAQTFQ 77
            |...|::.|......:|:|||.|||.|.:.|...|::..|..||.:.|.|.....|  |:.|.::
  Rat    44 FAFSLYKELVLKNPDKNIVFSSFSISTALVLLSLGAKNNTLKEILEGLKFNLTETPEAEIHQGYE 108

  Fly    78 FVLEKYRNSNL------LRVANKLYVQEGKQLKPAYQSAIKEQYHSEAESINFALNDAAAQAINA 136
            .:|::.   ||      :...:.|::::..|:...:|...:..|.:||.|.:|.....|.:.||.
  Rat   109 HLLQRL---NLPGDQVQISTGSALFIKKHLQILAEFQEKARALYQAEAFSTDFQQPHEAKKLIND 170

  Fly   137 WVNAKTQGKITELVSADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYMN 201
            :|..:|||||.||:|.  ....|.:||:|.::|||.|...|....|.:..|::.|::.||:..|.
  Rat   171 YVRKQTQGKIKELISV--LDKKTSMVLVNYIYFKGKWKMPFDPHDTFQSEFYLDEKKSVKVPMMK 233

  Fly   202 -QKAKFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKTVNLVDLADKLTVEEV 265
             :|....|...|:|.|:.||:.|..:..::|:|..|.|  :..:...|:...|....|.|....:
  Rat   234 IEKLTTPYFRDEELSCSVLELKYTGNASALFILPDQGR--MQQVEASLQPETLRRWKDTLRPRRI 296

  Fly   266 -HVKFPKFKVDYSLELAEKLKQLGITKMFTDQAEFSNLLESPEGVFVSKVLHKATIEVNEEGTEA 329
             .::.|||.:...:.|.:.|.:|||.::|:.||:.|.:..:.: :.||:|:|||.::|.|.||||
  Rat   297 DELRMPKFSISTDMRLGDILPELGIREVFSQQADLSRITGAKD-LSVSQVVHKAVLDVTETGTEA 360

  Fly   330 AAATGMIMMTRMMTF---PLQFQADRPFLYVI 358
            |||||:.::.....|   .:.|  :||||.:|
  Rat   361 AAATGVKIIPMCAKFYYVTMYF--NRPFLMII 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn55BNP_524953.1 SERPIN 13..370 CDD:238101 111/357 (31%)
LOC100909605XP_006240581.2 alpha-1-antitrypsin_like 41..404 CDD:239011 111/357 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X28
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

Return to query results.
Submit another query.