Sequence 1: | XP_017449758.1 | Gene: | Nrcam / 497815 | RGDID: | 3209 | Length: | 1315 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261500.1 | Gene: | Dscam2 / 38788 | FlyBaseID: | FBgn0265296 | Length: | 2101 | Species: | Drosophila melanogaster |
Alignment Length: | 1395 | Identity: | 348/1395 - (24%) |
---|---|---|---|
Similarity: | 516/1395 - (36%) | Gaps: | 355/1395 - (25%) |
- Green bases have known domain annotations that are detailed below.
Rat 46 LVQPPTITQQSPKDYIIDPR-------------ENIVIQCEAKGKPPPSFSW-TRNGTHFDIDKD 96
Rat 97 PLVTMKPGSGTLVINIMSEGKAETYE--GVYQCTARNERG-AAVSNNIVVRPSRSPLWTKERLEP 158
Rat 159 IIL-------RSGQSLVLPCRPPIGLPPAIIFWMDNSFQRLPQSERVSQGLNGDLYFSNVLPEDT 216
Rat 217 RED---YICYARFNHTQTIQQKQPISLKVISVDELNDTIAANLSDTEFYGAKSSKERPPTFLTPE 278
Rat 279 GNESHKEEL--RGNVLSLECIAEGLPTPVIYWIKEDGTLPVNRTF--------YRNFKKTLQIIH 333
Rat 334 VSEADSGNYQCIAKNALGAVHHTISVTVKAAPYWIVAPHNLVLSPGENGTLICRANGNPKPRISW 398
Rat 399 LTNG--VPVEIALDDPSRKIDGD-TIMFSNVQESS-SAVYQCNASNKYGYLLANAFVNVLAEPPR 459
Rat 460 ILTSANTLYQVIANRPALLDCAFFGSPMP-TIEWFKGTKG-------SALHEDIYVLHDNGTLEI 516
Rat 517 PVAQKDSTGTYTCVARNKLGMAKNEVHLEIKDPTRFIKQPEYAVVQRGSKVSFECKVKHDHTLIP 581
Rat 582 TILWLKDNG------ELPNDERFS--VDKDHLVVSDVKDEDGGTYTCAAN--------------- 623
Rat 624 ----------------------------------------------------------TTLDSVS 630
Rat 631 ASAVLRVVAPTPT------------------PAPIYDVPNPPFDLELTNQLDKSVQLTWTPGDDN 677
Rat 678 NSPITKFIIEYEDAMHE------AGLWRHQAEVSG-TQTTAQLK-LSPYVNYSFRVMAENSIGRS 734
Rat 735 VPSEASEQYLTKAAEPDQ---NPTAVEGLGTEPDNLVITW-KPLNGFQS---NGPGLQYKVS--- 789
Rat 790 -----WRQKDGDDEWTSVVVANVSKYIVSGTPTFVPYLIKVQALNDVGFAP--EPAAVMGHSGED 847
Rat 848 LPMVAPGNVRVSVVNSTLAEAHWDPVPPKSVRGHLQGYRIYYWKAQSSSKRNRRHIEKKILTFQG 912
Rat 913 SKTHGM---LPGLQPYSHYVLNVRVVNGKGEGPASADRGFHTPEGVPSAPSSLKIVNPTLDSLTL 974
Rat 975 EWDPPSHPNGILTEYILKYQPINSTHELGPLVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVG 1039
Rat 1040 SG------SQITEEAI-----------------------TTVDEGKK------------------ 1057
Rat 1058 ---AGIL---------------PPDVGAGKVRAVSPRIGNVTAAAAETYAN--------ISWE-- 1094
Rat 1095 YEGPEHVKFYVEY--GVAGSKEEWRKEIVNGSRSFFGLKGLMPGTAYKVRVGAEGDSGFVSSEDV 1157
Rat 1158 FETGPAMASRQVDIATQGWFIGLMCAVALL 1187 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nrcam | XP_017449758.1 | IgI_NrCAM | 50..144 | CDD:409458 | 32/110 (29%) |
Ig strand B | 68..72 | CDD:409458 | 1/3 (33%) | ||
Ig strand C | 81..85 | CDD:409458 | 2/4 (50%) | ||
Ig strand E | 106..110 | CDD:409458 | 0/3 (0%) | ||
Ig strand F | 124..129 | CDD:409458 | 3/4 (75%) | ||
Ig strand G | 138..141 | CDD:409458 | 0/2 (0%) | ||
Ig | 153..242 | CDD:416386 | 23/98 (23%) | ||
Ig strand A | 153..156 | CDD:409353 | 0/2 (0%) | ||
Ig strand A' | 158..162 | CDD:409353 | 2/10 (20%) | ||
Ig strand B | 165..173 | CDD:409353 | 2/7 (29%) | ||
Ig strand C | 180..186 | CDD:409353 | 2/5 (40%) | ||
Ig strand C' | 189..192 | CDD:409353 | 0/2 (0%) | ||
Ig strand D | 198..202 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 204..208 | CDD:409353 | 0/3 (0%) | ||
Ig strand F | 219..227 | CDD:409353 | 3/10 (30%) | ||
Ig strand G | 230..242 | CDD:409353 | 2/11 (18%) | ||
Ig | 281..362 | CDD:416386 | 30/90 (33%) | ||
Ig strand B | 292..296 | CDD:409353 | 2/3 (67%) | ||
Ig strand C | 305..309 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 327..331 | CDD:409353 | 0/3 (0%) | ||
Ig strand F | 341..346 | CDD:409353 | 2/4 (50%) | ||
Ig strand G | 354..357 | CDD:409353 | 1/2 (50%) | ||
Ig | 366..454 | CDD:416386 | 28/91 (31%) | ||
Ig strand B | 382..386 | CDD:409353 | 1/3 (33%) | ||
Ig strand C | 395..399 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 419..423 | CDD:409353 | 1/4 (25%) | ||
Ig strand F | 433..438 | CDD:409353 | 3/4 (75%) | ||
Ig strand G | 446..449 | CDD:409353 | 0/2 (0%) | ||
Ig | 460..546 | CDD:416386 | 25/93 (27%) | ||
Ig strand A | 460..463 | CDD:409353 | 0/2 (0%) | ||
Ig strand A' | 467..470 | CDD:409353 | 0/2 (0%) | ||
Ig strand B | 476..483 | CDD:409353 | 3/6 (50%) | ||
Ig strand C | 489..494 | CDD:409353 | 3/4 (75%) | ||
Ig strand C' | 496..498 | CDD:409353 | 0/1 (0%) | ||
Ig strand D | 505..509 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 512..517 | CDD:409353 | 1/4 (25%) | ||
Ig strand F | 525..533 | CDD:409353 | 4/7 (57%) | ||
Ig strand G | 536..546 | CDD:409353 | 2/9 (22%) | ||
Ig | 553..637 | CDD:416386 | 27/164 (16%) | ||
Ig strand A | 553..556 | CDD:409353 | 1/2 (50%) | ||
Ig strand A' | 558..562 | CDD:409353 | 1/3 (33%) | ||
Ig strand B | 565..574 | CDD:409353 | 1/8 (13%) | ||
Ig strand C | 582..587 | CDD:409353 | 2/4 (50%) | ||
Ig strand C' | 590..593 | CDD:409353 | 2/8 (25%) | ||
Ig strand D | 597..602 | CDD:409353 | 1/6 (17%) | ||
Ig strand E | 603..609 | CDD:409353 | 1/5 (20%) | ||
Ig strand F | 616..624 | CDD:409353 | 5/80 (6%) | ||
Ig strand G | 627..637 | CDD:409353 | 4/9 (44%) | ||
FN3 | 651..741 | CDD:238020 | 34/97 (35%) | ||
fn3 | 754..836 | CDD:394996 | 23/95 (24%) | ||
fn3 | 852..944 | CDD:394996 | 23/94 (24%) | ||
fn3 | 957..1041 | CDD:394996 | 27/83 (33%) | ||
fn3 | 1075..1143 | CDD:394996 | 17/79 (22%) | ||
Bravo_FIGEY | 1198..1287 | CDD:404722 | |||
Dscam2 | NP_001261500.1 | Ig | 51..127 | CDD:299845 | |
Ig | 138..>203 | CDD:299845 | |||
I-set | 238..327 | CDD:254352 | 28/95 (29%) | ||
Ig | 247..327 | CDD:299845 | 27/86 (31%) | ||
I-set | 332..418 | CDD:254352 | 24/112 (21%) | ||
IGc2 | 344..407 | CDD:197706 | 19/73 (26%) | ||
IG_like | 432..517 | CDD:214653 | 28/84 (33%) | ||
IGc2 | 436..507 | CDD:197706 | 25/70 (36%) | ||
I-set | 521..610 | CDD:254352 | 29/94 (31%) | ||
IGc2 | 533..597 | CDD:197706 | 25/69 (36%) | ||
Ig | 630..699 | CDD:143165 | 22/72 (31%) | ||
IG_like | 714..802 | CDD:214653 | 21/89 (24%) | ||
Ig | 725..802 | CDD:299845 | 17/78 (22%) | ||
Ig | 823..894 | CDD:143165 | 8/70 (11%) | ||
FN3 | 906..1006 | CDD:238020 | 36/104 (35%) | ||
FN3 | 1013..1111 | CDD:238020 | 26/105 (25%) | ||
FN3 | 1119..1209 | CDD:238020 | 24/96 (25%) | ||
FN3 | 1219..1313 | CDD:238020 | 31/94 (33%) | ||
Ig | 1336..1402 | CDD:143165 | 9/65 (14%) | ||
FN3 | 1409..1498 | CDD:238020 | 20/102 (20%) | ||
FN3 | 1515..1588 | CDD:238020 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |