Sequence 1: | XP_017449758.1 | Gene: | Nrcam / 497815 | RGDID: | 3209 | Length: | 1315 | Species: | Rattus norvegicus |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001246162.1 | Gene: | Dscam1 / 35652 | FlyBaseID: | FBgn0033159 | Length: | 2038 | Species: | Drosophila melanogaster |
Alignment Length: | 1526 | Identity: | 327/1526 - (21%) |
---|---|---|---|
Similarity: | 533/1526 - (34%) | Gaps: | 473/1526 - (30%) |
- Green bases have known domain annotations that are detailed below.
Rat 49 PPTITQQSPKDYIIDPRENI--------VIQCEAKGKPPPSFSWTR-NGTHFDIDKDPLVTMKPG 104
Rat 105 SGTLVINIMSEGK-------AETYE-----GVYQCTARNERGAAVSNNIVVRPSRSPLWTKERLE 157
Rat 158 PIILRSGQSLVLPCRPPIGLPP--AIIFW-MDNSFQRLPQSERVSQGL---NGDLYFSNVLPEDT 216
Rat 217 REDYICYARFNH-----------------TQTIQQKQP----------ISL----KVISVD---- 246
Rat 247 ------------------------ELNDTIA----------ANLSDTEFY--------GAK---- 265
Rat 266 --------SSKERPPT----FLTP-------EGN-----------------------ESHKEELR 288
Rat 289 GNV------------------------------------------LSLECIAEGLPTPVIYWIKE 311
Rat 312 DGTLPVNRTFYR---------NFKKTLQIIHVSEADSGNYQCIAKNALGAVHHTISVTVKAAPYW 367
Rat 368 IVAPHNLVLSPGENGTLICRANGNPKPRISWLTNGVPVEIALDDPSRK---IDGDTIMFSNVQES 429
Rat 430 S-SAVYQCNASNKYGYLLANAF-VNVLAEP----------------------------------- 457
Rat 458 --------------PRILT------------------------------SANTLYQV--IANRP- 475
Rat 476 ----------------ALLDCAFFGSPMPTIEWFKG---TKGSALHEDI----YVLHDNGTLEIP 517
Rat 518 VAQKDSTGTYTCVARNKLGMAKNEV-HLEIKDPTRFIKQPEYAVVQRGSKVSFECKVKHDHTLIP 581
Rat 582 TILWLKDNGEL--PNDERFSVDKD--------HLVVSDVKDEDGGTYTCAANTTLDSVSASAVLR 636
Rat 637 VVAPTPTPAPIYDVPNPPFDLELTNQLDKSVQLTWTPGDDNNSPITKFIIEYEDAMHEAGLWRH- 700
Rat 701 -QAEVSGTQTTAQL-KLSPYVNYSFRVMAENSIGRSVPSEASEQYLTKAAEPDQNPTAVEGLGTE 763
Rat 764 PDN---LVITWKPLNGFQSNGPGLQYKVSWRQKDGDDEWTSVVVANVSK------YIVSGTPTFV 819
Rat 820 PYLIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSVVNSTLAEAHWDPVPPKSVRGHLQG 884
Rat 885 YRIYYWKAQSSSKRNRRHIEKKILTFQGSKTHGMLPGLQPYSHYVLNVRVVNGKGEGPASADRGF 949
Rat 950 HTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYILKYQPINSTHELGPLVDLKIPANK 1014
Rat 1015 TRWTLKNLNFSTRYKFYFYAQTSVGSGSQ------------------ITEEAITTVDEGKK---- 1057
Rat 1058 -AGILPPDV--------------------GAGKVRAVS--------------------------- 1074
Rat 1075 --PRIGNVTAAAAETYA-NISWE-YEG---PEH---VKFYVEYGVAGSKEEWRKEIVNGSRSFFG 1129
Rat 1130 LKGLMPGTAYKVRVGAEGDSGFVSSEDVFET 1160 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Nrcam | XP_017449758.1 | IgI_NrCAM | 50..144 | CDD:409458 | 33/114 (29%) |
Ig strand B | 68..72 | CDD:409458 | 2/11 (18%) | ||
Ig strand C | 81..85 | CDD:409458 | 0/3 (0%) | ||
Ig strand E | 106..110 | CDD:409458 | 0/3 (0%) | ||
Ig strand F | 124..129 | CDD:409458 | 3/4 (75%) | ||
Ig strand G | 138..141 | CDD:409458 | 1/2 (50%) | ||
Ig | 153..242 | CDD:416386 | 26/125 (21%) | ||
Ig strand A | 153..156 | CDD:409353 | 0/2 (0%) | ||
Ig strand A' | 158..162 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 165..173 | CDD:409353 | 3/7 (43%) | ||
Ig strand C | 180..186 | CDD:409353 | 2/6 (33%) | ||
Ig strand C' | 189..192 | CDD:409353 | 0/2 (0%) | ||
Ig strand D | 198..202 | CDD:409353 | 0/3 (0%) | ||
Ig strand E | 204..208 | CDD:409353 | 2/3 (67%) | ||
Ig strand F | 219..227 | CDD:409353 | 3/7 (43%) | ||
Ig strand G | 230..242 | CDD:409353 | 3/25 (12%) | ||
Ig | 281..362 | CDD:416386 | 30/131 (23%) | ||
Ig strand B | 292..296 | CDD:409353 | 1/3 (33%) | ||
Ig strand C | 305..309 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 327..331 | CDD:409353 | 1/3 (33%) | ||
Ig strand F | 341..346 | CDD:409353 | 2/4 (50%) | ||
Ig strand G | 354..357 | CDD:409353 | 1/2 (50%) | ||
Ig | 366..454 | CDD:416386 | 24/92 (26%) | ||
Ig strand B | 382..386 | CDD:409353 | 0/3 (0%) | ||
Ig strand C | 395..399 | CDD:409353 | 1/3 (33%) | ||
Ig strand E | 419..423 | CDD:409353 | 1/3 (33%) | ||
Ig strand F | 433..438 | CDD:409353 | 2/4 (50%) | ||
Ig strand G | 446..449 | CDD:409353 | 0/2 (0%) | ||
Ig | 460..546 | CDD:416386 | 28/142 (20%) | ||
Ig strand A | 460..463 | CDD:409353 | 1/32 (3%) | ||
Ig strand A' | 467..470 | CDD:409353 | 1/2 (50%) | ||
Ig strand B | 476..483 | CDD:409353 | 2/6 (33%) | ||
Ig strand C | 489..494 | CDD:409353 | 1/4 (25%) | ||
Ig strand C' | 496..498 | CDD:409353 | 1/1 (100%) | ||
Ig strand D | 505..509 | CDD:409353 | 0/7 (0%) | ||
Ig strand E | 512..517 | CDD:409353 | 3/4 (75%) | ||
Ig strand F | 525..533 | CDD:409353 | 4/7 (57%) | ||
Ig strand G | 536..546 | CDD:409353 | 2/10 (20%) | ||
Ig | 553..637 | CDD:416386 | 20/93 (22%) | ||
Ig strand A | 553..556 | CDD:409353 | 0/2 (0%) | ||
Ig strand A' | 558..562 | CDD:409353 | 0/3 (0%) | ||
Ig strand B | 565..574 | CDD:409353 | 1/8 (13%) | ||
Ig strand C | 582..587 | CDD:409353 | 3/4 (75%) | ||
Ig strand C' | 590..593 | CDD:409353 | 1/4 (25%) | ||
Ig strand D | 597..602 | CDD:409353 | 1/4 (25%) | ||
Ig strand E | 603..609 | CDD:409353 | 1/13 (8%) | ||
Ig strand F | 616..624 | CDD:409353 | 3/7 (43%) | ||
Ig strand G | 627..637 | CDD:409353 | 3/9 (33%) | ||
FN3 | 651..741 | CDD:238020 | 36/92 (39%) | ||
fn3 | 754..836 | CDD:394996 | 18/90 (20%) | ||
fn3 | 852..944 | CDD:394996 | 19/91 (21%) | ||
fn3 | 957..1041 | CDD:394996 | 21/83 (25%) | ||
fn3 | 1075..1143 | CDD:394996 | 20/75 (27%) | ||
Bravo_FIGEY | 1198..1287 | CDD:404722 | |||
Dscam1 | NP_001246162.1 | Ig | 38..130 | CDD:299845 | 31/104 (30%) |
IG | 57..133 | CDD:214652 | 28/87 (32%) | ||
IG_like | 267..343 | CDD:214653 | 9/75 (12%) | ||
Ig | 269..340 | CDD:143165 | 8/70 (11%) | ||
IG_like | 353..425 | CDD:214653 | 12/71 (17%) | ||
IGc2 | 361..413 | CDD:197706 | 8/51 (16%) | ||
I-set | 433..527 | CDD:254352 | 25/94 (27%) | ||
IGc2 | 446..517 | CDD:197706 | 23/71 (32%) | ||
I-set | 533..618 | CDD:254352 | 23/89 (26%) | ||
IGc2 | 544..607 | CDD:197706 | 19/67 (28%) | ||
Ig | 641..714 | CDD:143165 | 4/72 (6%) | ||
IGc2 | 735..804 | CDD:197706 | 20/70 (29%) | ||
I-set | 819..914 | CDD:254352 | 21/106 (20%) | ||
Ig | 833..921 | CDD:299845 | 21/99 (21%) | ||
FN3 | 918..1011 | CDD:238020 | 36/96 (38%) | ||
FN3 | 1018..1116 | CDD:238020 | 19/100 (19%) | ||
FN3 | 1124..1217 | CDD:238020 | 20/98 (20%) | ||
FN3 | 1222..1312 | CDD:238020 | 24/92 (26%) | ||
Ig | 1339..1406 | CDD:299845 | 4/66 (6%) | ||
FN3 | 1409..1499 | CDD:238020 | 23/95 (24%) | ||
FN3 | 1504..1584 | CDD:238020 | |||
Dscam_C | 1890..2008 | CDD:289151 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |