DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrcam and Dscam1

DIOPT Version :9

Sequence 1:XP_017449758.1 Gene:Nrcam / 497815 RGDID:3209 Length:1315 Species:Rattus norvegicus
Sequence 2:NP_001246162.1 Gene:Dscam1 / 35652 FlyBaseID:FBgn0033159 Length:2038 Species:Drosophila melanogaster


Alignment Length:1526 Identity:327/1526 - (21%)
Similarity:533/1526 - (34%) Gaps:473/1526 - (30%)


- Green bases have known domain annotations that are detailed below.


  Rat    49 PPTITQQSPKDYIIDPRENI--------VIQCEAKGKPPPSFSWTR-NGTHFDIDKDPLVTMKPG 104
            ||...|:.|. ::.:|...|        .|:|:|.|.|.|...|.| :||        .|...||
  Fly    31 PPDADQKGPV-FLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGT--------AVGDVPG 86

  Rat   105 SGTLVINIMSEGK-------AETYE-----GVYQCTARNERGAAVSNNIVVRPSRSPLWTKERLE 157
                :..|.|:||       ||.|.     .||.|.|||:.|:.:|.::.||...|..:.::..:
  Fly    87 ----LRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVSQHYEEDIHK 147

  Rat   158 PIILRSGQSLVLPCRPPIGLPP--AIIFW-MDNSFQRLPQSERVSQGL---NGDLYFSNVLPEDT 216
            ..::| |.|.:|.|..|..:..  .:|.| .|......|.:|...:.|   :|:|:...|.|||.
  Fly   148 AFVIR-GNSAILKCDIPSFVADFVNVISWHSDEKENFYPGTEYDGKYLVLPSGELHIREVGPEDG 211

  Rat   217 REDYICYARFNH-----------------TQTIQQKQP----------ISL----KVISVD---- 246
            .:.|.|  |..|                 |:.:....|          |:|    |:.||.    
  Fly   212 YKSYQC--RTKHRLTGETRLSATKGRLVITEPVGSVSPQLSGNGNQEHITLTRVPKMGSVTLMCP 274

  Rat   247 ------------------------ELNDTIA----------ANLSDTEFY--------GAK---- 265
                                    .|||.:.          |.:.|:..|        |.:    
  Fly   275 AQAYPVPFFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 339

  Rat   266 --------SSKERPPT----FLTP-------EGN-----------------------ESHKEELR 288
                    |:|..|||    |..|       .||                       ||.|:|.:
  Fly   340 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSEPVLRIESVKKEDK 404

  Rat   289 GNV------------------------------------------LSLECIAEGLPTPVIYWIKE 311
            |..                                          :.|:|:|.|.|||.|.| :.
  Fly   405 GMYQCFVRNDQESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISW-EL 468

  Rat   312 DGTLPVNRTFYR---------NFKKTLQIIHVSEADSGNYQCIAKNALGAVHHTISVTVKAAPYW 367
            ||....|...|:         :....|.|..|...|.|.|:||||:.:|...|:..:.|...|| 
  Fly   469 DGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY- 532

  Rat   368 IVAPHNLVLSPGENGTLICRANGNPKPRISWLTNGVPVEIALDDPSRK---IDGDTIMFSNVQES 429
            |.......:..||...:.|...|.|...|.|..:...:.|     :||   ....|::..||:.:
  Fly   533 IRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPI-----NRKQKVFPNGTLIIENVERN 592

  Rat   430 S-SAVYQCNASNKYGYLLANAF-VNVLAEP----------------------------------- 457
            | .|.|.|.|.|:.||....:. |.|:..|                                   
  Fly   593 SDQATYTCVAKNQEGYSARGSLEVQVMVLPQIVPFAYEDLINMGDSIDLFCQIQKGDRPIKVHWS 657

  Rat   458 --------------PRILT------------------------------SANTLYQV--IANRP- 475
                          |::.|                              :..|.|.|  ..|.| 
  Fly   658 FERSAGDYGFDQVQPQMRTNRISEKTSMISIPSASPAHTGRDTCIASNKAGTTTYSVDLTVNVPP 722

  Rat   476 ----------------ALLDCAFFGSPMPTIEWFKG---TKGSALHEDI----YVLHDNGTLEIP 517
                            |.::|...|.|.|.:.|.|.   |.|.  ::|:    .:..:.|||.:.
  Fly   723 RWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE--YKDLKKSDNIRVEEGTLHVD 785

  Rat   518 VAQKDSTGTYTCVARNKLGMAKNEV-HLEIKDPTRFIKQPEYAVVQRGSKVSFECKVKHDHTLIP 581
            ..||.:.|.|.|.|.|.:|...:.| .:.::.|..|.::......:||.....:|:.|.:..:  
  Fly   786 NIQKTNEGYYLCEAINGIGSGLSAVIMISVQAPPEFTEKLRNQTARRGEPAVLQCEAKGEKPI-- 848

  Rat   582 TILWLKDNGEL--PNDERFSVDKD--------HLVVSDVKDEDGGTYTCAANTTLDSVSASAVLR 636
            .|||..:|..|  .||.|:::.::        .|.:...:..|...:||.|.....|..||  :.
  Fly   849 GILWNMNNMRLDPKNDNRYTIREEILSTGVMSSLSIKRTERSDSALFTCVATNAFGSDDAS--IN 911

  Rat   637 VVAPTPTPAPIYDVPNPPFDLELTNQLDKSVQLTWTPGDDNNSPITKFIIEYEDAMHEAGLWRH- 700
            ::        :.:||..|:.|::.::..:||||:|....|.|||:.::|||::   .....|.. 
  Fly   912 MI--------VQEVPEMPYALKVLDKSGRSVQLSWAQPYDGNSPLDRYIIEFK---RSRASWSEI 965

  Rat   701 -QAEVSGTQTTAQL-KLSPYVNYSFRVMAENSIGRSVPSEASEQYLTKAAEPDQNPTAVEGLGTE 763
             :..|.|..|.||: ||||...|:.|::|||:||.|..||| ...:|....|...|   :.:..|
  Fly   966 DRVIVPGHTTEAQVQKLSPATTYNIRIVAENAIGTSQSSEA-VTIITAEEAPSGKP---QNIKVE 1026

  Rat   764 PDN---LVITWKPLNGFQSNGPGLQYKVSWRQKDGDDEWTSVVVANVSK------YIVSGTPTFV 819
            |.|   :.:||||....:.||..|.|.|.::..:.:..:....:..:::      ..:.....:.
  Fly  1027 PVNQTTMRVTWKPPPRTEWNGEILGYYVGYKLSNTNSSYVFETINFITEEGKEHNLELQNLRVYT 1091

  Rat   820 PYLIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSVVNSTLAEAHWDPVPPKSVRGHLQG 884
            .|.:.:||.|.:|..|........:.|..|...|.:...:.:.|......|...|.:|..|.::.
  Fly  1092 QYSVVIQAFNKIGAGPLSEEEKQFTAEGTPSQPPSDTACTTLTSQTIRVGWVSPPLESANGVIKT 1156

  Rat   885 YRIYYWKAQSSSKRNRRHIEKKILTFQGSKTHGMLPGLQPYSHYVLNVRVVNGKGEGPASADRGF 949
            |::.|..:.......:||.:|.      :.:..:|.||:.|::|.:.|......|:|..|.....
  Fly  1157 YKVVYAPSDEWYDETKRHYKKT------ASSDTVLHGLKKYTNYTMQVLATTAGGDGVRSVPIHC 1215

  Rat   950 HTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYILKYQPINSTHELGPLVDLKIPANK 1014
            .|...||.||:.:|.:.....::.:.|.||:.||||:|:|.:..:...:..|   ....|:|..:
  Fly  1216 QTEPDVPEAPTDVKALVMGNAAILVSWRPPAQPNGIITQYTVYSKAEGAETE---TKTQKVPHYQ 1277

  Rat  1015 TRWTLKNLNFSTRYKFYFYAQTSVGSGSQ------------------ITEEAITTVDEGKK---- 1057
            ..:....|..:..|:|:..|.|::|.|.|                  ..:....|..|..|    
  Fly  1278 MSFEATELEKNKPYEFWVTASTTIGEGQQSKSIVAMPSDQVPAKIASFDDTFTATFKEDAKMPCL 1342

  Rat  1058 -AGILPPDV--------------------GAGKVRAVS--------------------------- 1074
             .|...|::                    |:..:::|:                           
  Fly  1343 AVGAPQPEITWKIKGVEFSANDRMRVLPDGSLLIKSVNRQDAGDYSCHAENSIAKDSITHKLIVL 1407

  Rat  1075 --PRIGNVTAAAAETYA-NISWE-YEG---PEH---VKFYVEYGVAGSKEEWRKEIVNGSRSFFG 1129
              |:..:||.:|..|.| .:..: :||   |.|   :.:..|:|      ||....|:.......
  Fly  1408 APPQSPHVTLSATTTDALTVKLKPHEGDTAPLHGYTLHYKPEFG------EWETSEVSVDSQKHN 1466

  Rat  1130 LKGLMPGTAYKVRVGAEGDSGFVSSEDVFET 1160
            ::||:.|:.|:|......:.|...:.|:..|
  Fly  1467 IEGLLCGSRYQVYATGFNNIGAGEASDILNT 1497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrcamXP_017449758.1 IgI_NrCAM 50..144 CDD:409458 33/114 (29%)
Ig strand B 68..72 CDD:409458 2/11 (18%)
Ig strand C 81..85 CDD:409458 0/3 (0%)
Ig strand E 106..110 CDD:409458 0/3 (0%)
Ig strand F 124..129 CDD:409458 3/4 (75%)
Ig strand G 138..141 CDD:409458 1/2 (50%)
Ig 153..242 CDD:416386 26/125 (21%)
Ig strand A 153..156 CDD:409353 0/2 (0%)
Ig strand A' 158..162 CDD:409353 0/3 (0%)
Ig strand B 165..173 CDD:409353 3/7 (43%)
Ig strand C 180..186 CDD:409353 2/6 (33%)
Ig strand C' 189..192 CDD:409353 0/2 (0%)
Ig strand D 198..202 CDD:409353 0/3 (0%)
Ig strand E 204..208 CDD:409353 2/3 (67%)
Ig strand F 219..227 CDD:409353 3/7 (43%)
Ig strand G 230..242 CDD:409353 3/25 (12%)
Ig 281..362 CDD:416386 30/131 (23%)
Ig strand B 292..296 CDD:409353 1/3 (33%)
Ig strand C 305..309 CDD:409353 1/3 (33%)
Ig strand E 327..331 CDD:409353 1/3 (33%)
Ig strand F 341..346 CDD:409353 2/4 (50%)
Ig strand G 354..357 CDD:409353 1/2 (50%)
Ig 366..454 CDD:416386 24/92 (26%)
Ig strand B 382..386 CDD:409353 0/3 (0%)
Ig strand C 395..399 CDD:409353 1/3 (33%)
Ig strand E 419..423 CDD:409353 1/3 (33%)
Ig strand F 433..438 CDD:409353 2/4 (50%)
Ig strand G 446..449 CDD:409353 0/2 (0%)
Ig 460..546 CDD:416386 28/142 (20%)
Ig strand A 460..463 CDD:409353 1/32 (3%)
Ig strand A' 467..470 CDD:409353 1/2 (50%)
Ig strand B 476..483 CDD:409353 2/6 (33%)
Ig strand C 489..494 CDD:409353 1/4 (25%)
Ig strand C' 496..498 CDD:409353 1/1 (100%)
Ig strand D 505..509 CDD:409353 0/7 (0%)
Ig strand E 512..517 CDD:409353 3/4 (75%)
Ig strand F 525..533 CDD:409353 4/7 (57%)
Ig strand G 536..546 CDD:409353 2/10 (20%)
Ig 553..637 CDD:416386 20/93 (22%)
Ig strand A 553..556 CDD:409353 0/2 (0%)
Ig strand A' 558..562 CDD:409353 0/3 (0%)
Ig strand B 565..574 CDD:409353 1/8 (13%)
Ig strand C 582..587 CDD:409353 3/4 (75%)
Ig strand C' 590..593 CDD:409353 1/4 (25%)
Ig strand D 597..602 CDD:409353 1/4 (25%)
Ig strand E 603..609 CDD:409353 1/13 (8%)
Ig strand F 616..624 CDD:409353 3/7 (43%)
Ig strand G 627..637 CDD:409353 3/9 (33%)
FN3 651..741 CDD:238020 36/92 (39%)
fn3 754..836 CDD:394996 18/90 (20%)
fn3 852..944 CDD:394996 19/91 (21%)
fn3 957..1041 CDD:394996 21/83 (25%)
fn3 1075..1143 CDD:394996 20/75 (27%)
Bravo_FIGEY 1198..1287 CDD:404722
Dscam1NP_001246162.1 Ig 38..130 CDD:299845 31/104 (30%)
IG 57..133 CDD:214652 28/87 (32%)
IG_like 267..343 CDD:214653 9/75 (12%)
Ig 269..340 CDD:143165 8/70 (11%)
IG_like 353..425 CDD:214653 12/71 (17%)
IGc2 361..413 CDD:197706 8/51 (16%)
I-set 433..527 CDD:254352 25/94 (27%)
IGc2 446..517 CDD:197706 23/71 (32%)
I-set 533..618 CDD:254352 23/89 (26%)
IGc2 544..607 CDD:197706 19/67 (28%)
Ig 641..714 CDD:143165 4/72 (6%)
IGc2 735..804 CDD:197706 20/70 (29%)
I-set 819..914 CDD:254352 21/106 (20%)
Ig 833..921 CDD:299845 21/99 (21%)
FN3 918..1011 CDD:238020 36/96 (38%)
FN3 1018..1116 CDD:238020 19/100 (19%)
FN3 1124..1217 CDD:238020 20/98 (20%)
FN3 1222..1312 CDD:238020 24/92 (26%)
Ig 1339..1406 CDD:299845 4/66 (6%)
FN3 1409..1499 CDD:238020 23/95 (24%)
FN3 1504..1584 CDD:238020
Dscam_C 1890..2008 CDD:289151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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