DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nrcam and Nrg

DIOPT Version :9

Sequence 1:XP_017449758.1 Gene:Nrcam / 497815 RGDID:3209 Length:1315 Species:Rattus norvegicus
Sequence 2:NP_001245581.1 Gene:Nrg / 31792 FlyBaseID:FBgn0264975 Length:1309 Species:Drosophila melanogaster


Alignment Length:1344 Identity:411/1344 - (30%)
Similarity:624/1344 - (46%) Gaps:159/1344 - (11%)


- Green bases have known domain annotations that are detailed below.


  Rat    48 QPPTITQQ-SPKDYIIDPREN-------IVIQCEAKGKPPPSFSWTRNGTHFDIDK-DPLVTMKP 103
            :||.||:| :|.:.:....:.       .:|:|||.|:|.|.:||.:||..||... |..:..:|
  Fly    27 RPPRITKQPAPGELLFKVAQQNKESDNPFIIECEADGQPEPEYSWIKNGKKFDWQAYDNRMLRQP 91

  Rat   104 GSGTLVINIMSEGKAETYEGVYQCTARNERGAAVSNNIVVRPSRSPLWTKERLEPIILRSGQSLV 168
            |.|||||.|..:..    .|.|||.|.||.|.|.||::.||.:....:..|..:.:....|:..:
  Fly    92 GRGTLVITIPKDED----RGHYQCFASNEFGTATSNSVYVRKAELNAFKDEAAKTLEAVEGEPFM 152

  Rat   169 LPCRPPIGLPPAIIFWM-----DNSFQRLPQSERVSQGLNGDLYFSNVLPEDTRED--YICYARF 226
            |.|..|.|.|...:.||     |.|.:.:..| |::....|:|:||||..||...|  |.|.|  
  Fly   153 LKCAAPDGFPSPTVNWMIQESIDGSIKSINNS-RMTLDPEGNLWFSNVTREDASSDFYYACSA-- 214

  Rat   227 NHTQTIQQKQPISLKVISVDELNDTIAANLSDTEFYGAKSSKER-PPTFLTPEGNESHKEELRGN 290
              |...:.:..|..||             |.|.:..|..:|:.: ||........:|  ..|||.
  Fly   215 --TSVFRSEYKIGNKV-------------LLDVKQMGVSASQNKHPPVRQYVSRRQS--LALRGK 262

  Rat   291 VLSLECIAEGLPTPVIYWIKEDGTLP-VNRTFYRNFKKTLQIIHVSEADSGNYQCIAKNALG-AV 353
            .:.|.||..|.|.|...|.|:...:. .:|....::.|:|.|...:..|:|.|.|...|.:| |.
  Fly   263 RMELFCIYGGTPLPQTVWSKDGQRIQWSDRITQGHYGKSLVIRQTNFDDAGTYTCDVSNGVGNAQ 327

  Rat   354 HHTISVTVKAAPYWIVAPHNLVLSPGENGTLICRANGNPKPRISWLTNGVPVEIALDDPSRKIDG 418
            ..:|.:.|.:.||:...|.....:..|.....|||.|.|:|:|||:.||.|:|.:..:|.|.:..
  Fly   328 SFSIILNVNSVPYFTKEPEIATAAEDEEVVFECRAAGVPEPKISWIHNGKPIEQSTPNPRRTVTD 392

  Rat   419 DTIMFSNVQESSSAVYQCNASNKYGYLLANAFVNVLAEPPRILTSANTLYQVIANRPALLDCAFF 483
            :||...|:.:..:..|.|||:|..||:..:.::||.||||.| :.|......:..|...:.|...
  Fly   393 NTIRIINLVKGDTGNYGCNATNSLGYVYKDVYLNVQAEPPTI-SEAPAAVSTVDGRNVTIKCRVN 456

  Rat   484 GSPMPTIEWFKGTKGSALHEDIYVLHDNGTLEIPVAQKDSTGTYTCVARNKLGMAKNEVHLEIKD 548
            |||.|.::|.:.:  :.|....|.:..||.|||........|.|||.|:||.|..:.:..|.:|:
  Fly   457 GSPKPLVKWLRAS--NWLTGGRYNVQANGDLEIQDVTFSDAGKYTCYAQNKFGEIQADGSLVVKE 519

  Rat   549 PTRFIKQPEYAVVQRGSKVSFECKVKHDHTLIPTILWLKDNGELPND--ERFSVDKDH-LVVSDV 610
            .||..::|:...|..|...:|.|...||.||...|.|.||...:..:  .||....|: |.::..
  Fly   520 HTRITQEPQNYEVAAGQSATFRCNEAHDDTLEIEIDWWKDGQSIDFEAQPRFVKTNDNSLTIAKT 584

  Rat   611 KDEDGGTYTCAANTTLDSVSASAVLRVVAPTPTPAPIYDVPNPPFDLELTNQLDKSVQLTWTPGD 675
            .:.|.|.|||.|.|.||..:|.|.|.|          .||||.|....:|.|.||: ::.|....
  Fly   585 MELDSGEYTCVARTRLDEATARANLIV----------QDVPNAPKLTGITCQADKA-EIHWEQQG 638

  Rat   676 DNNSPITKFIIEYEDAMHEAGLWRHQAEVSGTQTTAQLKLSPYVNYSFRVMAENSIGRSVPSEAS 740
            ||.|||..:.|::..:...|.......:|..|.::..:::||:.||:|||:|.|.||.|.||..|
  Fly   639 DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHS 703

  Rat   741 EQYLTKAAEPDQNPTAVEGLGTEPDNLVITWKPLNGFQSNGPGLQYKVSWRQKDGDDEW--TSVV 803
            :...|:...|.:||..|.|.||||:||||:|.|:...:.|.|...|.|||::......|  .::.
  Fly   704 DSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIF 768

  Rat   804 VANVSKYIVSGTPTFVPYLIKVQALNDVGFAPEPA-AVMGHSGEDLPMVAPGNVRV-SVVNSTLA 866
            ....:..:::..||||.|||||.|:||.|.:...| .|:|:||||.|:.||.|..: .:.:||..
  Fly   769 DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGEDRPLDAPTNFTMRQITSSTSG 833

  Rat   867 EAHWDPVPPKSVRGHLQGYRIYYWKAQSSSKRNRRHIEKKILTFQGSKTHGMLPGLQPYSHYVLN 931
            ...|.||..:|||||.:||:|..| .::..:...|.|..|     |...:.::...:|.|.....
  Fly   834 YMAWTPVSEESVRGHFKGYKIQTW-TENEGEEGLREIHVK-----GDTHNALVTQFKPDSKNYAR 892

  Rat   932 VRVVNGKGEGPASADRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYILKYQPI 996
            :...||:..||.||...|.|||||||....|........:..|.|..|.:|||.||.|.:.|:.:
  Fly   893 ILAYNGRFNGPPSAVIDFDTPEGVPSPVQGLDAYPLGSSAFMLHWKKPLYPNGKLTGYKIYYEEV 957

  Rat   997 NSTH-----ELGP-LVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVGSGSQITEEAITTVDEG 1055
            ..::     |..| :.|.::    ||..:..|..:::|:....|.|.:|.||:...|..|..|..
  Fly   958 KESYVGERREYDPHITDPRV----TRMKMAGLKPNSKYRISITATTKMGEGSEHYIEKTTLKDAV 1018

  Rat  1056 KKAGI--------LPPDVGAGKVRAVSPRIGNVTAAAAETYANISW--EYEGPEHVKFYVEYGVA 1110
            ..|..        ||.|.|..|.|                   |:|  ..||.....|:..:.:.
  Fly  1019 NVAPATPSFSWEQLPSDNGLAKFR-------------------INWLPSTEGHPGTHFFTMHRIK 1064

  Rat  1111 GSKEEWRKEIVNGSRSFFGLKGLMPGTAYKVR-VGAEGDSGFVSSEDVFET----GPAMASRQVD 1170
            | :.:|.:|....:..:..:.||.|.|||:.| |..:|.....|:....:|    ||.|.:.:. 
  Fly  1065 G-ETQWIRENEEKNSDYQEVGGLDPETAYEFRVVSVDGHFNTESATQEIDTNTVEGPIMVANET- 1127

  Rat  1171 IATQGWFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFGEYRSF 1235
            :|..|||||:|.|:|.:|::.:|:|.||||:||||.|.::|.|:...:.    .::|.|.||   
  Fly  1128 VANAGWFIGMMLALAFIIILFIIICIIRRNRGGKYDVHDRELANGRRDY----PEEGGFHEY--- 1185

  Rat  1236 ESDAEDHKPLKKGSRTPSDRTVKKEDSDDSLVDYGEG-----------------------VNGQF 1277
             |...|:|...:.|.:.:::...:.|: ||:.:||:|                       .:.|.
  Fly  1186 -SQPLDNKSAGRQSVSSANKPGVESDT-DSMAEYGDGDTAVATAAARAAAAARSKLTSLPTSTQQ 1248

  Rat  1278 NEDGSFIGQYSGKKEKEPAEGNES--------SEAPSPVNAMNS 1313
            .:...   |...:::::|...:.|        |.:|||.:..||
  Fly  1249 QQQQQ---QQQQQQQEQPQSTSASTVPLISLASPSPSPSSTSNS 1289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NrcamXP_017449758.1 IgI_NrCAM 50..144 CDD:409458 38/102 (37%)
Ig strand B 68..72 CDD:409458 1/3 (33%)
Ig strand C 81..85 CDD:409458 1/3 (33%)
Ig strand E 106..110 CDD:409458 3/3 (100%)
Ig strand F 124..129 CDD:409458 3/4 (75%)
Ig strand G 138..141 CDD:409458 2/2 (100%)
Ig 153..242 CDD:416386 27/95 (28%)
Ig strand A 153..156 CDD:409353 1/2 (50%)
Ig strand A' 158..162 CDD:409353 0/3 (0%)
Ig strand B 165..173 CDD:409353 2/7 (29%)
Ig strand C 180..186 CDD:409353 2/10 (20%)
Ig strand C' 189..192 CDD:409353 0/2 (0%)
Ig strand D 198..202 CDD:409353 0/3 (0%)
Ig strand E 204..208 CDD:409353 2/3 (67%)
Ig strand F 219..227 CDD:409353 4/9 (44%)
Ig strand G 230..242 CDD:409353 1/11 (9%)
Ig 281..362 CDD:416386 24/82 (29%)
Ig strand B 292..296 CDD:409353 1/3 (33%)
Ig strand C 305..309 CDD:409353 0/3 (0%)
Ig strand E 327..331 CDD:409353 2/3 (67%)
Ig strand F 341..346 CDD:409353 2/4 (50%)
Ig strand G 354..357 CDD:409353 0/2 (0%)
Ig 366..454 CDD:416386 29/87 (33%)
Ig strand B 382..386 CDD:409353 0/3 (0%)
Ig strand C 395..399 CDD:409353 2/3 (67%)
Ig strand E 419..423 CDD:409353 2/3 (67%)
Ig strand F 433..438 CDD:409353 2/4 (50%)
Ig strand G 446..449 CDD:409353 0/2 (0%)
Ig 460..546 CDD:416386 25/85 (29%)
Ig strand A 460..463 CDD:409353 1/2 (50%)
Ig strand A' 467..470 CDD:409353 0/2 (0%)
Ig strand B 476..483 CDD:409353 1/6 (17%)
Ig strand C 489..494 CDD:409353 1/4 (25%)
Ig strand C' 496..498 CDD:409353 0/1 (0%)
Ig strand D 505..509 CDD:409353 1/3 (33%)
Ig strand E 512..517 CDD:409353 3/4 (75%)
Ig strand F 525..533 CDD:409353 5/7 (71%)
Ig strand G 536..546 CDD:409353 2/9 (22%)
Ig 553..637 CDD:416386 29/86 (34%)
Ig strand A 553..556 CDD:409353 0/2 (0%)
Ig strand A' 558..562 CDD:409353 0/3 (0%)
Ig strand B 565..574 CDD:409353 2/8 (25%)
Ig strand C 582..587 CDD:409353 2/4 (50%)
Ig strand C' 590..593 CDD:409353 0/2 (0%)
Ig strand D 597..602 CDD:409353 2/4 (50%)
Ig strand E 603..609 CDD:409353 2/6 (33%)
Ig strand F 616..624 CDD:409353 5/7 (71%)
Ig strand G 627..637 CDD:409353 4/9 (44%)
FN3 651..741 CDD:238020 31/89 (35%)
fn3 754..836 CDD:394996 33/83 (40%)
fn3 852..944 CDD:394996 27/92 (29%)
fn3 957..1041 CDD:394996 22/89 (25%)
fn3 1075..1143 CDD:394996 15/70 (21%)
Bravo_FIGEY 1198..1287 CDD:404722 25/111 (23%)
NrgNP_001245581.1 Ig 55..128 CDD:299845 33/76 (43%)
IG_like 57..127 CDD:214653 33/73 (45%)
Ig 135..214 CDD:299845 24/79 (30%)
IG_like 141..216 CDD:214653 24/79 (30%)
ig 251..332 CDD:278476 23/82 (28%)
I-set 339..427 CDD:254352 29/87 (33%)
Ig 354..427 CDD:299845 26/72 (36%)
I-set 432..517 CDD:254352 26/87 (30%)
Ig 446..517 CDD:299845 23/72 (32%)
I-set 522..611 CDD:254352 30/88 (34%)
ig 525..609 CDD:278476 28/83 (34%)
FN3 613..707 CDD:238020 34/94 (36%)
FN3 716..807 CDD:238020 35/90 (39%)
fn3 817..905 CDD:278470 27/93 (29%)
FN3 917..1004 CDD:238020 23/90 (26%)
FN3 1041..1111 CDD:238020 19/89 (21%)
Bravo_FIGEY 1155..>1221 CDD:290593 23/74 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I9401
eggNOG 1 0.900 - - E1_KOG3513
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H21041
Inparanoid 1 1.050 496 1.000 Inparanoid score I1335
OMA 1 1.010 - - QHG47974
OrthoDB 1 1.010 - - D208655at33208
OrthoFinder 1 1.000 - - FOG0000777
OrthoInspector 1 1.000 - - otm45103
orthoMCL 1 0.900 - - OOG6_101169
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X532
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.780

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