DRSC/TRiP Functional Genomics Resources

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Protein Alignment PpD6 and gsp-3

DIOPT Version :9

Sequence 1:NP_524947.1 Gene:PpD6 / 49780 FlyBaseID:FBgn0005779 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_491429.1 Gene:gsp-3 / 172082 WormBaseID:WBGene00021113 Length:305 Species:Caenorhabditis elegans


Alignment Length:289 Identity:137/289 - (47%)
Similarity:206/289 - (71%) Gaps:4/289 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LNLNDLLNKLMSFRRSKMQRL--PLLESEVNLLCTLARELFLDEPMLLNVPAPIRVVGDIHGQFY 92
            :::::|:::|::...|. .||  .:.|.|:...|.:|:.:|..:..||.|..||.|.||||||:.
 Worm     5 MDVDNLMSRLLNVGMSG-GRLTTSVNEQELQTCCAVAKSVFASQASLLEVEPPIIVCGDIHGQYS 68

  Fly    93 DLLKILDQCGYPPQTRYLFLGDYVDRGKNSVETITLLLALRVKFPKHIYLLRGNHESQSVNRVYG 157
            |||:|.|:.|:||...:||||||||||:.::|||.|:|..::|:|::.::||||||..::|||||
 Worm    69 DLLRIFDKNGFPPDVNFLFLGDYVDRGRQNIETICLMLCFKIKYPENFFMLRGNHECPAINRVYG 133

  Fly   158 FFDECKRRY-TVKLWKTFVDCYNCMPVAAIISHRIFCCHGGLSPQLKELSNIESIARPTEVPETG 221
            |::||.||| :.:||..|.|.:|.||:..:|..||.|.||||||.|:.|..:..:.||.:.|...
 Worm   134 FYEECNRRYKSTRLWSIFQDTFNWMPLCGLIGSRILCMHGGLSPHLQTLDQLRQLPRPQDPPNPS 198

  Fly   222 LLCDLLWSDPDRYGFGWTSSDRGVSYLYGRDVLEKFLQKNDFDLVCRAHQVVEDGYEFFAKRQLV 286
            :..||||:|||::..||.::.|||||::|:||:.....:.|.|||.||||||:|||||||.:::|
 Worm   199 IGIDLLWADPDQWVKGWQANTRGVSYVFGQDVVADVCSRLDIDLVARAHQVVQDGYEFFASKKMV 263

  Fly   287 TVFSAPNYCGLYDNAGASMGVDKDLVISF 315
            |:||||:|||.:||:.|:|.||:::|.:|
 Worm   264 TIFSAPHYCGQFDNSAATMKVDENMVCTF 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpD6NP_524947.1 MPP_superfamily 51..317 CDD:301300 132/266 (50%)
PP2Ac 54..315 CDD:197547 131/261 (50%)
gsp-3NP_491429.1 MPP_superfamily 6..297 CDD:301300 137/288 (48%)
PP2Ac 29..299 CDD:197547 132/264 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0639
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53795
OrthoDB 1 1.010 - - D327461at33208
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.830

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