DRSC/TRiP Functional Genomics Resources

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Protein Alignment PpD3 and Ppef2

DIOPT Version :9

Sequence 1:NP_001262433.1 Gene:PpD3 / 49779 FlyBaseID:FBgn0005777 Length:520 Species:Drosophila melanogaster
Sequence 2:XP_038947795.1 Gene:Ppef2 / 305246 RGDID:1307093 Length:793 Species:Rattus norvegicus


Alignment Length:550 Identity:144/550 - (26%)
Similarity:221/550 - (40%) Gaps:171/550 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 FALQDGVSAVKADPAYLKGYYRRAAAHMSLGKFKQALCDFEFVAKCRPNDKDAKLKFTE------ 159
            ||.|:...|.|| .|.::.:|||..|.:.:    :..|.:..........:..::|..|      
  Rat    50 FAFQNAEKAFKA-AALIQRWYRRYMARLEM----RRRCTWNIFQSIEYAGQQDQVKLHEFFSYLV 109

  Fly   160 -------------CNKIVKMRAFERAIAVDKPEKTLSEMYSDMENITIEDDYKGPQLEDGKVTLK 211
                         .|::.....|.:.:.        :|...|.|:|.:.|.|.||:|     :..
  Rat   110 DHFTPSSHHERDFLNRMFTEERFAQDVE--------TEEGGDFESIEVPDSYTGPRL-----SFP 161

  Fly   212 FMKE----LMEHYKAQKRLHRKFAYKILCEIDTYMRAQPSLVDITVPDEEKFTICGDIHGQFYDL 272
            .:.:    |:|.::.:::||.::...:|.|...::...|::..::....|:.|:|||:|||..||
  Rat   162 LLPDHATALVEAFRLRQQLHARYVLNLLYETRRHLAQLPNINRVSTCYSEEVTVCGDLHGQLDDL 226

  Fly   273 MNIFEINGLPSEKNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNHFFLARGNHESINMNQMYGF 337
            :.||..|||||.:..|:|||||||||..|||.:..||.|.|:||..|.|.|||||...:|..|||
  Rat   227 IFIFYKNGLPSPERAYVFNGDFVDRGKDSVEVLMVLFAFMLVYPKEFHLNRGNHEDHLVNLRYGF 291

  Fly   338 TGEVTAKYT---SAMADIFTQVFNWLPLCHCINQKILVMHGGLFSTEDVTLDHIRRIERN----- 394
            |.||..||.   ..:......||.||||...:::|:||:|||:....|:.|  :.:::|:     
  Rat   292 TKEVMHKYKIHGKKILRTLQDVFCWLPLATLVDEKVLVLHGGVSDKTDLEL--LAKLDRHKIVST 354

  Fly   395 ----------------------------------------------------------------- 394
                                                                             
  Rat   355 MRCKTRKESENLEEQKRKDNQTSSAQKPTPWFLPQSRSLPSSPFHLGSGFKAYKACRSCSIPCGS 419

  Fly   395 ----------------------CQ-------------------------------PPEEGLMCEL 406
                                  |:                               |.|...:.::
  Rat   420 AVSKELSRQGQVRRSMDLELELCRQQAGFLGIREKRESLPLADCDADAGGMLKPTPEEWKQVVDI 484

  Fly   407 LWSDPQQWMGL-GQSKRGVGIQFGPDVTEKFCKDNNLDYIIRSHEVKDMGYEVAHNGKCITVFSA 470
            |||||....|. ..:.||.|..|||||||:..:...|.::|||||.|..|||..||.|.:|:|||
  Rat   485 LWSDPMAQEGCKANTVRGGGCYFGPDVTEQLMEKYKLQFLIRSHECKPEGYEFCHNRKVLTIFSA 549

  Fly   471 PNYCDTMGNMGAFITITGNNLKPNYKSFEA 500
            .||.:...|.||::.: |..|.|:...::|
  Rat   550 SNYYEVGSNRGAYVKL-GPALTPHIVQYQA 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpD3NP_001262433.1 TPR_11 49..114 CDD:290150 6/12 (50%)
TPR_1 49..81 CDD:278916
TPR repeat 49..77 CDD:276809
TPR repeat 82..112 CDD:276809 4/10 (40%)
MPP_PP5_C 198..513 CDD:277362 122/433 (28%)
PP2Ac 226..502 CDD:197547 116/401 (29%)
Ppef2XP_038947795.1 IQ 60..79 CDD:197470 7/23 (30%)
MPP_RdgC 161..577 CDD:277364 118/418 (28%)
FRQ1 617..761 CDD:227455
EFh 697..762 CDD:238008
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D215218at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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