DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PpD3 and pef-1

DIOPT Version :9

Sequence 1:NP_001262433.1 Gene:PpD3 / 49779 FlyBaseID:FBgn0005777 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_741091.1 Gene:pef-1 / 175257 WormBaseID:WBGene00003969 Length:707 Species:Caenorhabditis elegans


Alignment Length:531 Identity:161/531 - (30%)
Similarity:246/531 - (46%) Gaps:78/531 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 TGSKQPEEDTNARTKAELDFAAAEQYKNQGNEMLKT-------KEFSKAIDMYTKAIELHPNSAI 84
            :|.:.|..:....|:|.....::.|..|..:....|       ||.|.:...::.......||. 
 Worm     7 SGRQNPSTELKKSTRATTTTTSSSQRNNYNDNNQNTSSSSGNKKESSSSSKQHSSKKSKKSNSK- 70

  Fly    85 YYANRSLAHLRQESFGFALQDGVSAVKADPAYLKGYYRRAAAHMS---------------LGKFK 134
              .|||.:...|.:...|:            .::.:|||..|.:.               .|:..
 Worm    71 --KNRSPSPQPQLTIKSAI------------LIQKWYRRCEARLEARRRATWQIFTALEYAGEQD 121

  Fly   135 Q-ALCDFEFV----AKCRPNDKDAKLKFTECNKIVKMRAFERAIAVDKPEKTLSEMYSDME--NI 192
            | .|.|| |.    |....|.|...........:..:..:.:...:|...:|:.:|..|..  |:
 Worm   122 QLKLYDF-FADVIRAMAEENGKGGVENGRNSPLMSALSHYAKPSLMDSEGETVKKMLEDTSPTNV 185

  Fly   193 TIEDDYKGPQLEDGKVTLKFMK----ELMEHYKAQKRLHRKFAYKILCEIDTYMRAQPSLVDITV 253
            .|:.:||||.|     :|...|    :::|.:|..|.||.|:...||.|.....:|.||:..|:.
 Worm   186 DIDRNYKGPTL-----SLPLDKPQVAKMIEAFKVNKVLHPKYVLMILHEARKIFKAMPSVSRIST 245

  Fly   254 PDEEKFTICGDIHGQFYDLMNIFEINGLPSEKNPYLFNGDFVDRGSFSVECIFTLFGFKLLYPNH 318
            ....:.|||||:||:|.||..|...||.||..|||:|||||||||..|:|.:..||...::.|..
 Worm   246 SISNQVTICGDLHGKFDDLCIILYKNGYPSVDNPYIFNGDFVDRGGQSIEVLCVLFALVIVDPMS 310

  Fly   319 FFLARGNHESINMNQMYGFTGEVTAKY---TSAMADIFTQVFNWLPLCHCINQKILVMHGGLFST 380
            .:|.|||||...||..|||..|::.||   ::.:..:...||:|||:...|::.|.|:|||:...
 Worm   311 IYLNRGNHEDHIMNLRYGFIKELSTKYKDLSTPITRLLEDVFSWLPIATIIDRDIFVVHGGISDQ 375

  Fly   381 EDVT-LDHI--RRIERNCQPP-EEGL----------------MCELLWSDPQQWMGLGQSK-RGV 424
            .:|: ||.|  .|.:...:|| .:|:                |.:::||||:|..|...:. ||.
 Worm   376 TEVSKLDKIPRHRFQSVLRPPVNKGMESEKENSAVNVDEWKQMLDIMWSDPKQNKGCWPNVFRGG 440

  Fly   425 GIQFGPDVTEKFCKDNNLDYIIRSHEVKDMGYEVAHNGKCITVFSAPNYCDTMGNMGAFITITGN 489
            |..||.|:|..|.:.:....::||||.|..|||.:||..|:|||||.||.:|..|.||::...|.
 Worm   441 GSYFGADITASFLEKHGFRLLVRSHECKFEGYEFSHNNTCLTVFSASNYYETGSNRGAYVKFIGK 505

  Fly   490 NLKPNYKSFEA 500
            :.:|::..:.|
 Worm   506 SKQPHFVQYMA 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpD3NP_001262433.1 TPR_11 49..114 CDD:290150 13/71 (18%)
TPR_1 49..81 CDD:278916 6/38 (16%)
TPR repeat 49..77 CDD:276809 6/34 (18%)
TPR repeat 82..112 CDD:276809 6/29 (21%)
MPP_PP5_C 198..513 CDD:277362 125/331 (38%)
PP2Ac 226..502 CDD:197547 115/299 (38%)
pef-1NP_741091.1 MPP_RdgC 199..515 CDD:277364 118/315 (37%)
PP2Ac 218..514 CDD:197547 114/295 (39%)
EFh 634..699 CDD:238008
EF-hand_7 634..698 CDD:290234
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D215218at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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