DRSC/TRiP Functional Genomics Resources

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Protein Alignment PpD3 and gsp-3

DIOPT Version :9

Sequence 1:NP_001262433.1 Gene:PpD3 / 49779 FlyBaseID:FBgn0005777 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_491429.1 Gene:gsp-3 / 172082 WormBaseID:WBGene00021113 Length:305 Species:Caenorhabditis elegans


Alignment Length:262 Identity:109/262 - (41%)
Similarity:153/262 - (58%) Gaps:14/262 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 AQPSLVDITVPDEEKFTICGDIHGQFYDLMNIFEINGLPSEKNPYLFNGDFVDRGSFSVECIFTL 308
            :|.||:::..|    ..:|||||||:.||:.||:.||.|.:.| :||.||:||||..::|.|..:
 Worm    46 SQASLLEVEPP----IIVCGDIHGQYSDLLRIFDKNGFPPDVN-FLFLGDYVDRGRQNIETICLM 105

  Fly   309 FGFKLLYPNHFFLARGNHESINMNQMYGFTGEVTAKYTSA-MADIFTQVFNWLPLCHCINQKILV 372
            ..||:.||.:||:.|||||...:|::|||..|...:|.|. :..||...|||:|||..|..:||.
 Worm   106 LCFKIKYPENFFMLRGNHECPAINRVYGFYEECNRRYKSTRLWSIFQDTFNWMPLCGLIGSRILC 170

  Fly   373 MHGGLFSTEDVTLDHIRRIERNCQPPEEGLMCELLWSDPQQWM-GLGQSKRGVGIQFGPDVTEKF 436
            ||||| |....|||.:|::.|...||...:..:|||:||.||: |...:.|||...||.||....
 Worm   171 MHGGL-SPHLQTLDQLRQLPRPQDPPNPSIGIDLLWADPDQWVKGWQANTRGVSYVFGQDVVADV 234

  Fly   437 CKDNNLDYIIRSHEVKDMGYEVAHNGKCITVFSAPNYCDTMGNMGAFITITGNNL------KPNY 495
            |...::|.:.|:|:|...|||...:.|.:|:||||:||....|..|.:.:..|.:      ||..
 Worm   235 CSRLDIDLVARAHQVVQDGYEFFASKKMVTIFSAPHYCGQFDNSAATMKVDENMVCTFVMYKPTP 299

  Fly   496 KS 497
            ||
 Worm   300 KS 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpD3NP_001262433.1 TPR_11 49..114 CDD:290150
TPR_1 49..81 CDD:278916
TPR repeat 49..77 CDD:276809
TPR repeat 82..112 CDD:276809
MPP_PP5_C 198..513 CDD:277362 109/262 (42%)
PP2Ac 226..502 CDD:197547 109/262 (42%)
gsp-3NP_491429.1 MPP_superfamily 6..297 CDD:301300 105/256 (41%)
PP2Ac 29..299 CDD:197547 107/258 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0639
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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