DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment OPA1 and vps1

DIOPT Version :10

Sequence 1:XP_047304162.1 Gene:OPA1 / 4976 HGNCID:8140 Length:1047 Species:Homo sapiens
Sequence 2:NP_001342849.1 Gene:vps1 / 2542724 PomBaseID:SPAC767.01C Length:678 Species:Schizosaccharomyces pombe


Alignment Length:632 Identity:145/632 - (22%)
Similarity:239/632 - (37%) Gaps:168/632 - (26%)


- Green bases have known domain annotations that are detailed below.


Human   318 SLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPV 382
            |||.:.:::.:..|..... |..| ||::.||..||:||:||||.|......|||:| ::||.|:
pombe     4 SLIKVVNQLQEAFSTVGVQ-NLID-LPQITVVRSQSSGKSSVLENIVGRDFLPRGTG-IVTRRPL 65

Human   383 KVTL----------------SEGPHHVALFKDSSR----------------EFDLTKEEDLAALR 415
            .:.|                |:|       ||.:.                ||:..:||    :.
pombe    66 VLQLINRPSASGKNEETTTDSDG-------KDQNNSSEWGEFLHLPGQKFFEFEKIREE----IV 119

Human   416 HEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAY 480
            .|.|.:..|||    .:|...|.|.:..|.:..:.||||||:..........|.::.|..:...|
pombe   120 RETEEKTGKNV----GISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKY 180

Human   481 MQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKL 545
            :...|||||.:...:.|...|....|..::||.|.|||.|||||||.:|.    :.:..|:.|::
pombe   181 ISKNNAIILAVNAANTDLANSDGLKLAREVDPEGLRTIGVLTKVDLMDKG----TDVVDILAGRV 241

Human   546 FPMKALGYFAVVTGKGNSSESIEAIR---EYEEEFFQ-----NSK---------LLKTSMLKAHQ 593
            .|:: |||..|:.......|..::||   |.|..||:     .||         ..|.:|:..|.
pombe   242 IPLR-LGYVPVINRGQKDIEGKKSIRIALEAERNFFETHPSYGSKAQYCGTPFLARKLNMILMHH 305

Human   594 V--TTRNLSLAVSDCFWKMVRESVEQQADS----FKATRFNLETEWKNNY-----PRLRELDRNE 647
            :  |...:.:.::....|...| :....|:    ..:...||.|::.|.|     .|..||...|
pombe   306 IRNTLPEIKVRINAALAKYQAE-LHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSATE 369

Human   648 LFEKAKNE-ILDEVIS--LSQVTPKHWEEILQQSLWERVSTHVIENIYLPAAQT-MNSGTFNTTV 708
            |...|:.. :..|:.|  :..:.|  ::|:....:     ..::.|...|:... |.:..|...|
pombe   370 LSGGARIAFVFHEIFSNGIQAIDP--FDEVKDSDI-----RTILYNSSGPSPSLFMGTAAFEVIV 427

Human   709 DIKLKQWTDKQLPNKAVEVAWETLQEEFSRFMTEPKGKEHDDIFDKLKEAVKEESIKRHKWNDFA 773
            ..::|:..|..|  |.|.:.::.|....::.:..|       || |....:|:|..|        
pombe   428 KQQIKRLEDPSL--KCVSLIYDELVRILNQLLQRP-------IF-KRYPLLKDEFYK-------- 474

Human   774 EDSLRVIQHNALEDRSISDKQQWDAAIYFMEEALQARLKDTENAIENMVGPDWKKRWLYWKNRTQ 838
                                    ..|.|..:.:|    .|...:.:||..:..           
pombe   475 ------------------------VVIGFFRKCMQ----PTNTLVMDMVAMEGS----------- 500

Human   839 EQCVHNETKNELEKMLKCNEEHPAYLASDEITTVRKNLESRGVEVDP 885
                            ..|..||.:|:..:...:.::..|:.:.|||
pombe   501 ----------------YINTVHPDFLSGHQAMAIVQSQNSKPIPVDP 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OPA1XP_047304162.1 DLP_1 342..616 CDD:206738 91/324 (28%)
OPA1_C 672..994 CDD:466080 33/215 (15%)
vps1NP_001342849.1 DLP_1 25..311 CDD:206738 90/307 (29%)
Dynamin_M 232..517 CDD:460033 66/366 (18%)
GED 588..678 CDD:460495
Blue background indicates that the domain is not in the aligned region.

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