DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gish and ckl7

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_001330873.1 Gene:ckl7 / 834433 AraportID:AT5G44100 Length:476 Species:Arabidopsis thaliana


Alignment Length:484 Identity:204/484 - (42%)
Similarity:278/484 - (57%) Gaps:86/484 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAPQLHLEYRFYKLL--GSHADN 118
            |::|..|::|||||.|:||||.||.|:...|.||:|:|.:|:|.||||.|.:.|.||  ||    
plant     3 LVIGGKFKLGKKIGSGSFGELYLGVNVQTGEEVAVKLENVKTKHPQLHYESKLYMLLQGGS---- 63

  Fly   119 APDGIPRIYHLGTCGGRYNAMVLELLGLSLEDLFNICARKFSLKTVLMIAKQLLHRIEYVHSRHL 183
               |||.|...|. .|.|:.||::|||.|||||||.|.||.:||||||:|.|||:|:|::|:|..
plant    64 ---GIPNIKWFGV-EGDYSVMVIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLLNRVEFMHTRGF 124

  Fly   184 IYRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYIDLDTNRHIPYREHKSLTGTARYMSINTHMG 248
            ::||:||:|||:|  ..::...::||||||.|:|.||.|::||||||:|:|||||||.|:|||:|
plant   125 LHRDIKPDNFLMG--LGRKANQVYIIDFGLGKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLG 187

  Fly   249 REQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCDGHPEEFATYL 313
            .|||||||||:||::.||||:||||||||||.|.|::|.:|.:.|.:|||||||...|.||.:|.
plant   188 VEQSRRDDLESLGYVLMYFLKGSLPWQGLKAGTKKQKYDRISEKKVSTPIEVLCKNQPSEFVSYF 252

  Fly   314 RYVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFDWTGKTMSTP-VGSLQTGHEVIISPNKDR 377
            .|.|.|.|.:.|||.:|:|||:|||.|:||..:..||||  .:..| :|| .:|     |.::.|
plant   253 HYCRSLRFDDKPDYSYLKRLFRDLFIREGYQFDYVFDWT--VLKYPQIGS-SSG-----SSSRTR 309

  Fly   378 HNVTAKTNAKGGVAAWPDVPKPGATLGNLTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPITQQ 442
            |:.||               |||                        .|.|         ||.:|
plant   310 HHTTA---------------KPG------------------------FNAD---------PIERQ 326

  Fly   443 PEVEVVDETKCCCFFKRKKKKSTRQKXLDGVQCSPEREAVTLLRATSHSNSRDSVLNNP--SQDY 505
            ..:              ..|::||.|....|:....|...|.......|.||:|. :.|  .|.:
plant   327 ERI--------------LGKETTRYKIPGAVEAFSRRHPTTTSSPRDRSRSRNSD-DGPFSKQTH 376

  Fly   506 IQQATSQHTLRYPPSASMLTPTPTTNTPT 534
            .....:..:.||..|:|......:::.|:
plant   377 GDSERANSSSRYRASSSRKAVAASSSRPS 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 167/294 (57%)
S_TKc 62..335 CDD:214567 156/274 (57%)
CK1gamma_C 354..428 CDD:289378 13/74 (18%)
ckl7NP_001330873.1 STKc_CK1_delta_epsilon 8..282 CDD:271027 161/283 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11909
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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