DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gish and CKL6

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_567812.1 Gene:CKL6 / 828972 AraportID:AT4G28540 Length:479 Species:Arabidopsis thaliana


Alignment Length:454 Identity:206/454 - (45%)
Similarity:278/454 - (61%) Gaps:57/454 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 MVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAPQLHLEYRFYKLL--GSHADNA 119
            ::|..|::|:|||.|:||||.|..:|...|..|:|:||.|:|.||||.|.:.|.||  ||     
plant     8 VIGGKFKLGRKIGGGSFGELFLAVSLQTGEEAAVKLEPAKTKHPQLHYESKIYMLLQGGS----- 67

  Fly   120 PDGIPRIYHLGTCGGRYNAMVLELLGLSLEDLFNICARKFSLKTVLMIAKQLLHRIEYVHSRHLI 184
              |||.:...|. .|.|||||::|||.|||||||.|.|:.:||.|||:|.||:.|:||:|||..:
plant    68 --GIPSLKWFGV-QGDYNAMVIDLLGPSLEDLFNYCNRRLTLKAVLMLADQLISRVEYMHSRGFL 129

  Fly   185 YRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYIDLDTNRHIPYREHKSLTGTARYMSINTHMGR 249
            :||:||:|||:|  ..::...::||||||||:|.||.|:|||||||:|:|||||||.|:|||:|.
plant   130 HRDIKPDNFLMG--LGRKANQVYIIDFGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGV 192

  Fly   250 EQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCDGHPEEFATYLR 314
            |||||||||:||::.|||||||||||||||.|.|::|.:|.:.|.:|||||||..:|.||.:|.:
plant   193 EQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKVSTPIEVLCKSYPPEFVSYFQ 257

  Fly   315 YVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFDWTGKTMSTPVGSLQTGHEVIISPNKDRHN 379
            |.|.|.|.:.|||.:|:|||:|||.|:||..:..||||  .:..|..|.:: |    |...:||.
plant   258 YCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWT--ALKHPQSSARS-H----SSTHERHR 315

  Fly   380 VTAKTNAKGGVAAWPDVPKP-GATLGNLTPADR-HGSVQVVSSTNGELNPDDPTAGHS------N 436
                 ..|.|:.|.|...|| ..::||:  .|: .|:|:..:..|  :....|...|:      .
plant   316 -----TGKPGMGAGPSAEKPERISVGNI--RDKFSGAVEAFARRN--VRGPSPHQNHTRHRTLDE 371

  Fly   437 TPITQQPEVEVVDETKCCCFFKRKKKKSTRQKXLDGVQCSPEREAVTLLRATSHS----NSRDS 496
            .| :.:|.|.:|.|         |.:.::|..       |..|.||......|.|    .||||
plant   372 IP-SMKPAVNMVSE---------KGRNTSRYG-------SASRRAVASGSRPSSSGEQRESRDS 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 168/294 (57%)
S_TKc 62..335 CDD:214567 157/274 (57%)
CK1gamma_C 354..428 CDD:289378 18/75 (24%)
CKL6NP_567812.1 STKc_CK1_delta_epsilon 12..286 CDD:271027 162/283 (57%)
PHA03307 302..>471 CDD:223039 36/148 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11909
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.