DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gish and ttbk2

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:XP_012824152.2 Gene:ttbk2 / 780299 XenbaseID:XB-GENE-493335 Length:1298 Species:Xenopus tropicalis


Alignment Length:552 Identity:148/552 - (26%)
Similarity:230/552 - (41%) Gaps:128/552 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAPQLHLEYRFYKLLGSHADNAP 120
            ::|...::|.:|||.|.|||:....:|...|:||:|:|..:.....|.:|....|.|        
 Frog    15 ILVKERWKVLRKIGGGGFGEIYDALDLLTRENVALKVESAQQPKQVLKMEVAVLKKL-------- 71

  Fly   121 DGIPRIYHLGTCG--GRYNAMVLELLGLSLEDLFNICAR-KFSLKTVLMIAKQLLHRIEYVHSRH 182
            .|...:.....||  .|:|.:|::|.|.:|.||....:| .||:.|:|.:.:|:|..||.:||..
 Frog    72 QGKDHVCRFIGCGRNDRFNYVVMQLQGRNLADLRRSQSRGTFSISTMLRLGRQILESIESIHSVG 136

  Fly   183 LIYRDVKPENFLIGR-TSTKREKIIHIIDFGLAKEYIDL--DTNRHIPYREHKSLTGTARYMSIN 244
            .::||:||.||.:|| .||.|:  .:::|||||:::.:.  |..   |.|......||.||.|:|
 Frog   137 FLHRDIKPSNFAMGRFPSTCRK--CYMLDFGLARQFTNSCGDVR---PPRAVAGFRGTVRYASVN 196

  Fly   245 THMGREQSRRDDLEALGHMFMYFLRGSLPWQGLK----ADTLKERYQKIGDTKRATPIEVLCDGH 305
            .|..||..|.|||.:|.:|.:.|:.|.|||:.:|    ..::||||:.          .::....
 Frog   197 AHRNREMGRHDDLWSLFYMLVEFVVGQLPWRKIKDKEQVGSIKERYEH----------RLMLKHL 251

  Fly   306 PEEFATYLRYVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFDW----------TGKTMSTP- 359
            |.||:.:|.::..||:|..|||..|..:|.:.....|..:...|||          |..|.:|| 
 Frog   252 PPEFSVFLEHIIGLDYFTKPDYQLLVSVFDNSMKTFGVLESDPFDWEKSGSDGSLITTTTSTTPQ 316

  Fly   360 ------------------VGSL-----------------QTGHEVIISPNK----DRHNVTAKTN 385
                              .|.|                 :.|..||:||.|    ..|....:.:
 Frog   317 LHTRLTPAAIGIANATPIPGDLLRENTDEVFPDEQFSDGENGIPVIVSPEKLPGSPNHQRLQEKD 381

  Fly   386 AKGGVAAWP--DVPKPGATLGNLTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPI------TQQ 442
                  .|.  |..:....:|....|...      .::||:.|...|:.|   :||      .|.
 Frog   382 ------VWEEMDANRNKIKMGICKAATED------ENSNGQGNGHAPSLG---SPIRVRSETAQD 431

  Fly   443 PEVEVVDETKCCCFFKRKKK-----KSTRQKXLDGVQCSPEREAVT--LLRATSHSNSRDSVLNN 500
            .:|.::.:.:....|:.:::     |....| ||.....|:||..|  .|...|.::.|.|....
 Frog   432 RDVPLLRKLRTIHSFELERRMTLESKPDADKFLDNCPEKPQRETNTGGPLAEGSCASPRQSKKTV 496

  Fly   501 PSQDYIQQATSQHTLRY----------PPSAS 522
            |     ..|.:.|...|          |.|||
 Frog   497 P-----PTAQADHAWHYDDEYIPEGSKPGSAS 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 101/312 (32%)
S_TKc 62..335 CDD:214567 95/282 (34%)
CK1gamma_C 354..428 CDD:289378 19/115 (17%)
ttbk2XP_012824152.2 PKc_like 20..281 CDD:419665 95/283 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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