DRSC/TRiP Functional Genomics Resources

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Protein Alignment gish and vrk1

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_998550.1 Gene:vrk1 / 406694 ZFINID:ZDB-GENE-040426-2709 Length:425 Species:Danio rerio


Alignment Length:435 Identity:122/435 - (28%)
Similarity:185/435 - (42%) Gaps:79/435 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 FRVGKKIGCGNFGELRLGKNLYNNEHVA-----IKMEPMKSKAPQLHLEYRFY------KLLGSH 115
            :::|..:|.|.||.|.|.....:....|     ||:||  |....|..|.:||      .|:|:.
Zfish    38 WKLGSAVGQGGFGLLYLANEDSSGPVTADAPYVIKVEP--SDNGPLFSELKFYMRAAKPDLIGAW 100

  Fly   116 ADNAPD---GIPRIYHLG---TCGGRYNAMVLELLGLSLEDLFNICARKFSLKTVLMIAKQLLHR 174
            ..:...   |:|:.:..|   ..|.||..||::..|..|:.||....:|||.|.||.:..:||..
Zfish   101 MKSKKMEYLGVPKYWGSGFHEKNGKRYRFMVMDRFGTDLQKLFEGNGKKFSRKLVLQLGLRLLDI 165

  Fly   175 IEYVHSRHLIYRDVKPENFLIGRTSTKREKIIHIIDFGLA---------KEYIDLDTNRHIPYRE 230
            :||:|....::.|:|..|.|:..|:..:   :.::|:|||         |||      :..|.|.
Zfish   166 LEYIHDHEYVHADIKASNLLLSYTNPNQ---VFLVDYGLAYRYAPEGVPKEY------KEDPKRC 221

  Fly   231 HKSLTGTARYMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA 295
            |   .||..:.||:.|.|...|||.|||.:|:..:.:|...|||:....|.|..|..|:......
Zfish   222 H---DGTIEFTSIDAHKGVSPSRRADLEIMGYCMIQWLCSRLPWEDKLQDPLYVRDSKLRCRDNI 283

  Fly   296 TPIEVLC--DGH-PEEFATYLRYVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFDWTGKTMS 357
            ......|  .|: |.|...:::.|:.|.:.:.||||.||.:.|......|.||:.:.|:...|.|
Zfish   284 DEFLKSCFASGNIPAEMGKFMQEVKVLGYTDRPDYDKLRGILQQGLKSIGSTDDKKLDFGVATNS 348

  Fly   358 TPVGSLQTGHEVIISPNKDRHNVTAKTNAKGGVAAWPDVPKPGATLGNLTPADRHGSVQVVSSTN 422
            |.:.|::|       |.:      .|...||..|...|          .|||.:..:.|     .
Zfish   349 TSLPSVKT-------PKR------KKAEEKGQSADETD----------STPAKKRRAPQ-----K 385

  Fly   423 GELNPDDPTAGHSNTPI---TQQPEVEVVDETKCCCFFKRKKKKS 464
            .|:|....||..:..|:   ||......|.:::     .|.||.|
Zfish   386 KEVNGAKKTASPAKRPVKKETQASSEPAVKKSR-----GRPKKNS 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 95/320 (30%)
S_TKc 62..335 CDD:214567 90/301 (30%)
CK1gamma_C 354..428 CDD:289378 17/73 (23%)
vrk1NP_998550.1 PKc_like 27..327 CDD:304357 90/302 (30%)
SPS1 37..>265 CDD:223589 74/240 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 343..425 26/114 (23%)
GAGA_bind <373..>424 CDD:283799 15/70 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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