DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gish and vrk2

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_957464.2 Gene:vrk2 / 394145 ZFINID:ZDB-GENE-040426-1046 Length:574 Species:Danio rerio


Alignment Length:510 Identity:125/510 - (24%)
Similarity:200/510 - (39%) Gaps:96/510 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 NFRVGKKIGCGNFGELRLGKNLYN-----NEHVAIKMEPMKSKAPQLHLEYRFYKLLGSHADNAP 120
            |:|:||.||.|.||.:.|.....|     :....||:| .....| |..|.:||:....     |
Zfish    25 NWRIGKMIGKGGFGLIYLASQDVNVPVRDDADFVIKVE-YHENGP-LFSELKFYQRAAK-----P 82

  Fly   121 D--------------GIPRIYHLG---TCGGRYNAMVLELLGLSLEDLFNICARKFSLKTVLMIA 168
            :              |||..:..|   :.|.||..||::.||..|:.:......:....:||.:.
Zfish    83 ETMSKWMKSKQLGFLGIPTYWGSGLTESNGTRYRFMVMDRLGTDLQKVLIDNGGQLRKTSVLQLG 147

  Fly   169 KQLLHRIEYVHSRHLIYRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYIDLDTNRHIPYREH-- 231
            ..:|..:||:|....::.|:|..|.|:|.....:   :::.|:||:..|  .....|..|:|:  
Zfish   148 VLMLDVLEYIHDNEYVHADIKAANLLLGYRDPNK---VYLADYGLSYRY--CPNGEHKEYKENPK 207

  Fly   232 KSLTGTARYMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPW-QGLKADT-LKERYQKIGDTKR 294
            |...||..|.||:.|.|...|||.||:.||:..:::..|:||| ..||... ::|...|:.....
Zfish   208 KGHNGTIEYTSIDAHKGVAASRRGDLKVLGYCLLHWQCGTLPWLPSLKNPAEVQEAKAKLMSNLP 272

  Fly   295 ATPIEVLCDGHPEEFATYLRYVRRLDFFETPDYDFLRRLFQ--------DLFDRKGYTDEGEFDW 351
            .:.:::.......|.|.:|..|:.|.:.|.|||..||.:..        ||..::  ..|.....
Zfish   273 DSVLKMSTSSSSMEIAQFLSRVKDLGYNEKPDYQALRMVLSATGLQGPLDLSRQR--ASETVRPT 335

  Fly   352 TGKTMSTP------VGSLQ---TGHEV------IISPNKDRHNVTAKTNAKGGVAAWPDVPKPGA 401
            |.:..|.|      :|..:   |..|:      :.||||.......:|:.:..|..  |....|:
Zfish   336 TQRAASQPKTTEKKMGRSKPAVTAEEIDEEQLGVSSPNKVWRKTKPQTHKQRPVRT--DTAAKGS 398

  Fly   402 TLGNLTPADRHGSVQVVSSTNGELNPDDPTAGHSNTPITQQPEVEVVDETKCCCFFKRKKKKSTR 466
            ...|..|.:....|      :.|..|..|.. |..|....:...|:..|.|....::.|...:.|
Zfish   399 IRQNPMPCESDEDV------SDEYEPLPPRV-HPRTRAGTRQRQELKQEKKNEDVYEGKTWMTNR 456

  Fly   467 QK--XLDGVQCSPEREAVTLLRATSHSNSRDSVLNN-----PSQDYIQQATSQHT 514
            ::   .|..|                 ||..|:.:|     ...||.:..|::||
Zfish   457 RQNHQYDNQQ-----------------NSTRSIDDNYAVASSKADYWRSCTNKHT 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 88/326 (27%)
S_TKc 62..335 CDD:214567 83/298 (28%)
CK1gamma_C 354..428 CDD:289378 17/88 (19%)
vrk2NP_957464.2 STKc_VRK2 13..313 CDD:271025 84/299 (28%)
SPS1 25..406 CDD:223589 102/396 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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