DRSC/TRiP Functional Genomics Resources

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Protein Alignment gish and C55B6.5

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_509211.2 Gene:C55B6.5 / 183840 WormBaseID:WBGene00016941 Length:102 Species:Caenorhabditis elegans


Alignment Length:87 Identity:20/87 - (22%)
Similarity:33/87 - (37%) Gaps:14/87 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 MVGPNFRVGKKIGCGNFGEL-----RLGKNLYN-----NEHVAIKMEPMKSKAPQLHLEYRFYKL 111
            ::...:::..|||.|:.|::     ||.:|...     |::|.    .:..|......|..|||.
 Worm    10 LLAKQYKLTTKIGAGDVGQVWQCTDRLDENKLKIVKIINKYVG----GVGPKDDSFANEVEFYKK 70

  Fly   112 LGSHADNAPDGIPRIYHLGTCG 133
            ..:...|......|.|....||
 Worm    71 CLTRRFNLKRTQVRFYQNKCCG 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 20/83 (24%)
S_TKc 62..335 CDD:214567 20/82 (24%)
CK1gamma_C 354..428 CDD:289378
C55B6.5NP_509211.2 PKc_like 14..>71 CDD:304357 15/60 (25%)
SPS1 15..>71 CDD:223589 15/59 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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