DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gish and C08F8.6

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_001379133.1 Gene:C08F8.6 / 182416 WormBaseID:WBGene00007448 Length:380 Species:Caenorhabditis elegans


Alignment Length:429 Identity:113/429 - (26%)
Similarity:181/429 - (42%) Gaps:84/429 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LMVG---PNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAPQLHLEY----RFYKLLG 113
            |.||   ..:::.||:|.|.||.:....| ...:..|:|:|....|...|.:|.    ...|..|
 Worm     7 LSVGTKVKKWQIDKKLGEGAFGAVYKCSN-PKGDLFALKVEGKDEKIQLLKMEVYVLNELKKAGG 70

  Fly   114 SHADNAPDGIPRIYHLGTCGGR---YNAMVLELLGLSLEDLFNIC-ARKFSLKTVLMIAKQLLHR 174
            .|..|..|           .|:   :|.:|:..:||||.||..|. .:|||:.|.:.||:|.|..
 Worm    71 RHFCNIED-----------KGQVDNFNYVVMTFVGLSLADLRAISPTKKFSMGTAISIARQSLEA 124

  Fly   175 IEYVHSRHLIYRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYIDLDTNRHIPYREHKSLTGTAR 239
            :|.:|:...::|||||.|:.|||......:.::::|||:|:::...|.....| |......||.:
 Worm   125 LEDMHNIGYLHRDVKPGNYTIGRAEVNELRKVYVLDFGMARKFAHEDGTIKKP-RNVAGFRGTVK 188

  Fly   240 YMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA---TPI--E 299
            |..::.|.|||..|:||.|...:|.:...:|||||:.:      ...|.:|:.|||   .||  :
 Worm   189 YAPVSCHAGRELCRQDDCETWLYMVVELTKGSLPWRNM------TEIQDVGNEKRAIRRDPIVKK 247

  Fly   300 VLCDGHPEEFATYLRYVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFDWTGKTMSTPVGSLQ 364
            .:..|.|.|:...|..:.:..||:.|:|:.:..|.::.....|.| |..:||....|.      :
 Worm   248 KMFGGCPREYLDILEAIDKGQFFDEPNYERIYYLLREAMKNTGST-EYPYDWEQSLMK------K 305

  Fly   365 TGHEVIISPNKDRHNVTAKTNAKGGVAAWPDVPKPGATLGNLTPADRHGSVQVVSSTNGELNPDD 429
            |..|    ..|.:..|..:|.                              :|:.....||... 
 Worm   306 TKEE----QEKKKKGVVDQTE------------------------------KVIKKKEVELAEG- 335

  Fly   430 PTAGHSNTPITQQPEVEVVDETKCCCFFKRKKKKSTRQK 468
              ..|..|....:...|:|:|.|     :.||::...:|
 Worm   336 --KSHKETKEVTKVSKEIVEEKK-----EEKKEEKKEEK 367

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 92/305 (30%)
S_TKc 62..335 CDD:214567 87/285 (31%)
CK1gamma_C 354..428 CDD:289378 9/73 (12%)
C08F8.6NP_001379133.1 STKc_TTBK 15..283 CDD:270919 87/286 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160784
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.