DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gish and F35C11.3

DIOPT Version :9

Sequence 1:NP_001262624.1 Gene:gish / 49701 FlyBaseID:FBgn0250823 Length:537 Species:Drosophila melanogaster
Sequence 2:NP_495737.1 Gene:F35C11.3 / 174324 WormBaseID:WBGene00009402 Length:361 Species:Caenorhabditis elegans


Alignment Length:396 Identity:115/396 - (29%)
Similarity:179/396 - (45%) Gaps:87/396 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 FRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEP-MKSKAPQLHLEYRFY------------KLLG 113
            |.|.||:|.|..|::.|...:......|:|:|| ||:|..:: |:...|            :|||
 Worm    20 FTVKKKLGEGACGQVFLVDLIQGKGSAAMKVEPLMKNKEDEI-LKMEVYVLKKLQNSRHVCRLLG 83

  Fly   114 SHADNAPDGIPRIYHLGTCGGRYNAMVLELLGLSLEDL-FNICARKFSLKTVLMIAKQLLHRIEY 177
            |.....                |..||:.:||..:.|: ..:..||.|..:.:.:..||:..::.
 Worm    84 SGKTET----------------YTYMVMSVLGKEIGDVRRRLPQRKMSAPSTVRVFIQLVKALQD 132

  Fly   178 VHSRHLIYRDVKPENFLIGRTSTKREKIIHIIDFGLAKEYIDLDTNRHIPYRE--HKSL-TGTAR 239
            :|....::|||||.|..:|   .|.|::::|.||||:::.:..|.:..:..||  :||: .||.|
 Worm   133 MHEAGFVHRDVKPSNMALG---VKNEQVVYIFDFGLSRQIMLPDASGKLKLREPRNKSMFRGTVR 194

  Fly   240 YMSINTHMGREQSRRDDLEALGHMFMYFLRGSLPWQGL-KADT--LKERYQKIGDTKRATPIEVL 301
            |.|:|.|:.:||.|.|||....:..:.....:|||:|. |.:|  |||         :.|.:: |
 Worm   195 YCSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKKETSALKE---------KTTDVQ-L 249

  Fly   302 CDGHPEEFATYLRYVRRLDFFETPDY-DFLRRLFQDLFDRKGYTDEGEFDWTGKTMSTPVGSLQT 365
            |.|.|:.|......:|:|.:.|||.| .|:.:|..||  .||......|:|..|      |:|..
 Worm   250 CKGCPKSFLEIATTLRKLTYKETPPYGSFMEKLKADL--PKGVKMTDPFEWNLK------GALDE 306

  Fly   366 GHEVIISPNK-DRHNVTAKTNAKGGVAAWPDVPKPGATLGN-----LTPADRHGSVQVVSSTNG- 423
            .:    :.|| ||.:.     .:||          ||...|     :...||..:..  ||.|| 
 Worm   307 NN----NGNKSDREDA-----ERGG----------GADTVNEVDESVITEDRADTTS--SSKNGE 350

  Fly   424 ELNPDD 429
            |..|:|
 Worm   351 EYAPED 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
gishNP_001262624.1 STKc_CK1_gamma 61..354 CDD:271028 94/312 (30%)
S_TKc 62..335 CDD:214567 88/293 (30%)
CK1gamma_C 354..428 CDD:289378 19/80 (24%)
F35C11.3NP_495737.1 STKc_TTBK 19..283 CDD:270919 87/292 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160160788
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1164
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.