DRSC/TRiP Functional Genomics Resources

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Protein Alignment hrg and PAPS1

DIOPT Version :9

Sequence 1:NP_001261097.1 Gene:hrg / 49636 FlyBaseID:FBgn0015949 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_173240.2 Gene:PAPS1 / 838378 AraportID:AT1G17980 Length:713 Species:Arabidopsis thaliana


Alignment Length:833 Identity:269/833 - (32%)
Similarity:390/833 - (46%) Gaps:171/833 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QHNGNSTSGGPPAKQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLN 77
            |.||         ::.|::..||:..|...|:.:|.||...|:...::||::|...|.|:|..|:
plant     5 QQNG---------QRFGVSEPISMGGPTEFDVIKTRELEKHLQDVGLYESKEEAVRREEVLGILD 60

  Fly    78 TLVKQWVKEISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERT-DYFQSF 141
            .:||.|:|.||.:|.:.:....:...||:||||||||||..|||||.|||.||:..|. |:|...
plant    61 QIVKTWIKTISRAKGLNDQLLHEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATREGDFFGEL 125

  Fly   142 FEVLKKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRSV 206
            ..:|.:.|||||...|.:|.||::....:|:.||||:|:|.|..||:|.||..|::|:|.|.::|
plant   126 QRMLSEMPEVTELHPVPDAHVPLMGFKLNGVSIDLLYAQLPLWVIPEDLDLSQDSILQNADEQTV 190

  Fly   207 RSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTCQLYPNA 271
            ||||||||||:||.|||||:|||..||.::.|||:.|:|||..|:.||:.||:||||.|||||||
plant   191 RSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINWALLVARICQLYPNA 255

  Fly   272 AAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFN 336
            ....||.:||.||.:|.|||.:.|..||..:|..||||||:|..||.|:|||||||||..||::|
plant   256 LPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDRLHIMPIITPAYPCMNSSYN 320

  Fly   337 VSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCGL 401
            |||||.:::..||.||..|.:.:...:..|:.|||..:||..|::::.:.:::...||..:|.|.
plant   321 VSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFEAYKNYLQIDISAANVDDLRKWKGW 385

  Fly   402 VESKVRLLIGNLERNPHIALAHVNPKCFEFKKGQSANNSQNNSGNEDDLKQSQGNQSAVTSAPFC 466
            |||::|.|...:||  |..:.|.:|...:|:.                           ||.|..
plant   386 VESRLRQLTLKIER--HFKMLHCHPHPHDFQD---------------------------TSRPLH 421

  Fly   467 SMWFIGLEFER----SENLNVDLTESIQNFTEHVMMHGVNIKML-KEGMTIDARHVKRKQLSLYL 526
            ..:|:||:.::    :|....|:..:::.|     .|.||...| ..||.|...|:||:.|..::
plant   422 CSYFMGLQRKQGVPAAEGEQFDIRRTVEEF-----KHTVNAYTLWIPGMEISVGHIKRRSLPNFV 481

  Fly   527 DSDFLKRERKSMESHNNFNNTLLANRKRLSTELAQSQDPLPPGQQPSSGNRGR-DSGAKIQRLSD 590
                                                   .|.|.:||..::|. ||..:.:    
plant   482 ---------------------------------------FPGGVRPSHTSKGTWDSNRRSE---- 503

  Fly   591 SLTEENSNASSDMGAGTPTTPTTAQLSAPSFKS-SGKN---GSEIDVVEQEPTQPH--------N 643
               ..||:.||...|.|.||..:::..|.|... .||.   |....:.:|.....|        |
plant   504 ---HRNSSTSSAPAATTTTTEMSSESKAGSNSPVDGKKRKWGDSETLTDQPRNSKHIAVSVPVEN 565

  Fly   644 NGNASSNTTTTEVA-------C--------SXQPP----TLHPHPPHQQPPPAPPQPPAHHHHHQ 689
            ....|.|.:...:.       |        |..||    .....||...|......|.||.....
plant   566 CEGGSPNPSVGSICSSPMKDYCTNGKSEPISKDPPENVVAFSKDPPESLPIEKIATPQAHETEEL 630

  Fly   690 KFRKNNNAAAAAASNSIFNQRSILHAASSLSAALSITGHKRKQQTATSTTMISSSNIAHSNYTQH 754
            :       .:....|.:..|  |.|..:.|||            |||.....::||         
plant   631 E-------ESFDFGNQVIEQ--ISHKVAVLSA------------TATIPPFEATSN--------- 665

  Fly   755 STHNNNGGGGGSHYNKTYYIDDDDE--DNNQPLLTPNNQTQQQQKAVRITATS 805
                      ||.:  .|...::.|  ...||........||::..::::.||
plant   666 ----------GSPF--PYEAVEELEVLPTRQPDAAHRPSVQQRKPIIKLSFTS 706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrgNP_001261097.1 PTZ00418 28..600 CDD:240410 218/578 (38%)
PAP_central 29..371 CDD:282745 169/342 (49%)
PAP_RNA-bind 374..534 CDD:282743 38/164 (23%)
PAPS1NP_173240.2 PAP_central 12..356 CDD:398542 170/343 (50%)
PAP_RNA-bind 359..488 CDD:398540 40/201 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 355 1.000 Domainoid score I207
eggNOG 1 0.900 - - E1_COG5186
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56959
Inparanoid 1 1.050 399 1.000 Inparanoid score I469
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D326577at2759
OrthoFinder 1 1.000 - - FOG0001429
OrthoInspector 1 1.000 - - otm2394
orthoMCL 1 0.900 - - OOG6_100691
Panther 1 1.100 - - LDO PTHR10682
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X722
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.830

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