DRSC/TRiP Functional Genomics Resources

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Protein Alignment hrg and PAPS2

DIOPT Version :9

Sequence 1:NP_001261097.1 Gene:hrg / 49636 FlyBaseID:FBgn0015949 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_565611.1 Gene:PAPS2 / 817127 AraportID:AT2G25850 Length:800 Species:Arabidopsis thaliana


Alignment Length:746 Identity:253/746 - (33%)
Similarity:365/746 - (48%) Gaps:133/746 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVKEISVS 90
            |..|:|..:|:|.|...|::|..||...|....::||::|...|.|::.:::.:||.|||:::..
plant    21 KSYGITEPLSIAGPSAADVKRNLELEKFLVDEGLYESKEETMRREEVVVRIDQIVKHWVKQLTRQ 85

  Fly    91 KNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIER-TDYFQSFFEVLKKQPEVTEC 154
            :...:...|.....|:||||||||||...||||.|||.|..:.| .|:|..|.::|.:..||||.
plant    86 RGYTDQMVEDANAVIFTFGSYRLGVHGPMADIDTLCVGPSYVNREEDFFIFFRDILAEMEEVTEL 150

  Fly   155 RSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRSVRSLNGCRVTDEIL 219
            :.|.:|.|||:|..|.||.||||:|.:||..||.|.|:.:.::|.::|.::|||||||||.|:||
plant   151 QPVTDAHVPVMKFKFQGISIDLLYASISLLVIPQDLDISNSSVLCDVDEQTVRSLNGCRVADQIL 215

  Fly   220 ALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTCQLYPNAAAATLVHKFFLVF 284
            .||||.|:||..||.:|.||||.|:|||..|:.|||.||:||||.||.||||..:.||.:||.|:
plant   216 KLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALLVARLCQFYPNAIPSMLVSRFFRVY 280

  Fly   285 SRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFNVSESTKKVILTEF 349
            ::|:|||||:|...:..:|.|.|||||.|..||||||||||||||..||::|||:||.:|:..:|
plant   281 TQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYHLMPIITPAYPCMNSSYNVSQSTLRVMTEQF 345

  Fly   350 NRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCGLVESKVRLLIGNLE 414
            ..|..|..||.|.:..|..||:...||..|::::.:.|.:..|:|.|.|.|.|||:.|.|...:|
plant   346 QFGNTICQEIELNKQHWSSLFQQYMFFEAYKNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIE 410

  Fly   415 RNPH-IALAHVNPKCFEFKKGQSANNSQNNSGNEDDLKQSQGNQSAVTSAPF--CSMWFIGLE-- 474
            |:.: :.:.|..|                             |:...||..|  |: :|:||:  
plant   411 RDTNGMLMCHPQP-----------------------------NEYVDTSKQFRHCA-FFMGLQRA 445

  Fly   475 --FERSENLNVDLTESIQNFTEHVMMHGVNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKS 537
              |...|....|:..::..|.:.|.|:    ...:.||.:...||:|:||..::..:..||.|:|
plant   446 DGFGGQECQQFDIRGTVDEFRQEVNMY----MFWRPGMDVHVSHVRRRQLPSFVFPNGYKRSRQS 506

  Fly   538 MESHNNFNNTLLANRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKIQRLSDSLTE--ENSNAS 600
            ..                     |||....||          |.|  :..||||:..  :..|..
plant   507 RH---------------------QSQQCREPG----------DEG--VGSLSDSVERYAKRKNDD 538

  Fly   601 SDMGAGTPTTPTTAQ-----LSAPSFKSSGKNGS---EIDVVEQEPTQPHNNGNASSNTTTTEVA 657
            ..|.:........|.     |.|.|..|||...|   :|.:|.....:....|:...|.|:.   
plant   539 EIMNSRPEKREKRASCSLHTLDAASPDSSGITTSGTPQIGIVPGPRAECLVTGDLVCNVTSL--- 600

  Fly   658 CSXQPPTLHPHPPHQQPPPAPPQPPAHHHHHQKF-------RKNNNAAAAAASNSIF--NQRSIL 713
                                    |......:||       ||.:.....:.|..|.  :.|:::
plant   601 ------------------------PNVEVEAEKFISKITELRKFSQYEHTSGSEQILEVDSRALV 641

  Fly   714 ------------HAASSLSAALSITGHKRKQ 732
                        |....|||.|:..|.:.|:
plant   642 QSYHDLAEPVAKHVRPDLSALLACEGGQNKE 672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrgNP_001261097.1 PTZ00418 28..600 CDD:240410 223/581 (38%)
PAP_central 29..371 CDD:282745 167/342 (49%)
PAP_RNA-bind 374..534 CDD:282743 40/166 (24%)
PAPS2NP_565611.1 PAP_central 24..367 CDD:282745 167/342 (49%)
PAP_RNA-bind 371..502 CDD:282743 39/164 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 355 1.000 Domainoid score I207
eggNOG 1 0.900 - - E1_COG5186
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 399 1.000 Inparanoid score I469
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D326577at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm2394
orthoMCL 1 0.900 - - OOG6_100691
Panther 1 1.100 - - O PTHR10682
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X722
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.830

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