DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrg and Papola

DIOPT Version :9

Sequence 1:NP_001261097.1 Gene:hrg / 49636 FlyBaseID:FBgn0015949 Length:827 Species:Drosophila melanogaster
Sequence 2:XP_038968325.1 Gene:Papola / 314417 RGDID:1308673 Length:773 Species:Rattus norvegicus


Alignment Length:843 Identity:375/843 - (44%)
Similarity:486/843 - (57%) Gaps:181/843 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 NGNSTSGG-----PPAKQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILA 74
            ||..|:.|     ||.:..|:||.||||.|:..|...|.:|..:|:|:.|||.::||..|:.||.
  Rat    17 NGPVTTQGSQQTQPPQRHYGITSPISLAAPKETDCLLTQKLIETLKPFGVFEEEEELQRRILILG 81

  Fly    75 KLNTLVKQWVKEISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQ 139
            |||.|||:|::|||.|||:|:|..|.:||||:||||||||||.|||||||||||||:::|:|:|.
  Rat    82 KLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFT 146

  Fly   140 SFFEVLKKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHR 204
            ||::.||.|.||.:.|:||||||||||:.|||||||:|||||:|:.||:|.|||||:||:|||.|
  Rat   147 SFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 211

  Fly   205 SVRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTCQLYP 269
            .:|||||||||||||.|||||:||||.||.||||||:|.||||.||:.|||:|||||||||||||
  Rat   212 CIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYP 276

  Fly   270 NAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIITPAYPQQNST 334
            ||.|:|||||||||||:|:||||||||.|:..||...|||||||.||||||||||||||||||||
  Rat   277 NAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNST 341

  Fly   335 FNVSESTKKVILTEFNRGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWC 399
            :|||.||:.|::.||.:|:.|||||:|.:..|.:|||||:||.:|:|:||||.::.|....|||.
  Rat   342 YNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFFQKYKHYIVLLASAPTEKQRLEWV 406

  Fly   400 GLVESKVRLLIGNLERNPHIALAHVNPKCFEFKKGQSANNSQNNSGNEDDLKQSQGNQSAVTSAP 464
            ||||||:|:|:|:||:|..|.||||||:.|...| :|.:..:                       
  Rat   407 GLVESKIRILVGSLEKNEFITLAHVNPQSFPAPK-ESPDREE----------------------- 447

  Fly   465 FCSMWFIGLEF---ERSENLNVDLTESIQNFTEHVMMHGVNIKMLKEGMTIDARHVKRKQLSLYL 526
            |.:||.|||.|   |.||||:||||..||:||:.|....:|.||.:..|.|.|.|||||||...|
  Rat   448 FRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFELDMKIAAMHVKRKQLHQLL 512

  Fly   527 DSDFLKRERKSMESHNNFNNTLLANRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKIQRLSDS 591
            .|..|::                  ||:.|||                       |.|:..|:||
  Rat   513 PSHVLQK------------------RKKHSTE-----------------------GVKLAALNDS 536

  Fly   592 LTEENSNASSDMGAGTPTTPTTAQLSAP---SFKSSGKN---------------GSEIDVVEQEP 638
            ..:.:.::.:.|..   .:||:|..::|   |..|.|:|               .||:.|.:...
  Rat   537 SLDLSMDSDNSMSV---PSPTSAMKTSPLNSSGSSQGRNSPAPAVTAASVTSIQASEVSVPQANS 598

  Fly   639 TQ-PHNNGNASSNTTTTEVACSXQPPTLHPHPPHQQPPPAP-------------PQPPAHHHHHQ 689
            :: |....:.|...|.|:.|.|              |||.|             |.|        
  Rat   599 SESPGGPSSESIPQTATQPAIS--------------PPPKPTVSRVVSSTRLVNPSP-------- 641

  Fly   690 KFRKNNNAAAAAASNSIFNQRSILHAASSLSAALSITGHKRKQQTATSTTMISSSNIAHSNYTQH 754
              |.:.|||....:                    .|.|.||     ||:        .|...:..
  Rat   642 --RPSGNAATKVPN--------------------PIVGVKR-----TSS--------PHKEESPK 671

  Fly   755 STHNNNGGGGGSHYNKTYYIDDDDEDNNQPLLTPNNQTQQQQKAVRITATSASPATSVPVAAS 817
            .|....              |:..||.|...|:.:::|:.:::..  ..|||:|:.:.|.:||
  Rat   672 KTKTEE--------------DETSEDANCLALSGHDKTETKEQVG--METSAAPSEAAPASAS 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrgNP_001261097.1 PTZ00418 28..600 CDD:240410 320/574 (56%)
PAP_central 29..371 CDD:282745 235/341 (69%)
PAP_RNA-bind 374..534 CDD:282743 71/162 (44%)
PapolaXP_038968325.1 PAP_central 36..378 CDD:398542 235/341 (69%)
PAP_RNA-bind 381..510 CDD:398540 68/152 (45%)
motB <516..662 CDD:183756 43/238 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339918
Domainoid 1 1.000 500 1.000 Domainoid score I332
eggNOG 1 0.900 - - E1_COG5186
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 637 1.000 Inparanoid score I796
OMA 1 1.010 - - QHG48793
OrthoDB 1 1.010 - - D252593at33208
OrthoFinder 1 1.000 - - FOG0001429
OrthoInspector 1 1.000 - - otm44964
orthoMCL 1 0.900 - - OOG6_100691
Panther 1 1.100 - - O PTHR10682
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X722
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

Return to query results.
Submit another query.