DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment hrg and Papolg

DIOPT Version :9

Sequence 1:NP_001261097.1 Gene:hrg / 49636 FlyBaseID:FBgn0015949 Length:827 Species:Drosophila melanogaster
Sequence 2:NP_001100714.1 Gene:Papolg / 305586 RGDID:1310337 Length:739 Species:Rattus norvegicus


Alignment Length:756 Identity:361/756 - (47%)
Similarity:466/756 - (61%) Gaps:78/756 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 KQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFESQDELNHRMEILAKLNTLVKQWVKEISVS 90
            |..|:||.||||.|:..|...|.:|..:::|:.|||.::|||||:.:|.|||.|||:|:.:||.|
  Rat    17 KHYGITSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDISES 81

  Fly    91 KNMPESAAEKLGGKIYTFGSYRLGVHHKGADIDALCVAPRNIERTDYFQSFFEVLKKQPEVTECR 155
            ||:|.|....:||||:||||||||||.|||||||||||||::||:|:||||||.||.|..|...|
  Rat    82 KNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKHQDGVRNLR 146

  Fly   156 SVEEAFVPVIKMNFDGIEIDLLFARLSLKEIPDDFDLRDDNLLRNLDHRSVRSLNGCRVTDEILA 220
            :||:|||||||..||||||||:||||:::.|.|:.|||||:.||:||.|.:|||||||||||||.
  Rat   147 AVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRVTDEILH 211

  Fly   221 LVPNIENFRLALRTIKLWAKKHGIYSNSLGYFGGVTWAMLVARTCQLYPNAAAATLVHKFFLVFS 285
            ||||.|.|||.||.:|||||:.|||||.||:.|||:|||||||||||||||||:|||||||||||
  Rat   212 LVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFS 276

  Fly   286 RWKWPNPVLLKHPDNVNLRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFNVSESTKKVILTEFN 350
            :|:||||||||.|:..||...|||||||.||||||||||||||||||||:|||.||:.|::.||.
  Rat   277 KWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFK 341

  Fly   351 RGMNITDEIMLGRIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCGLVESKVRLLIGNLER 415
            :|:.:||||:.|:..|.:|.|.|:||.:|||:|||..::.|.::||||.||||||:|:|:|||||
  Rat   342 QGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLER 406

  Fly   416 NPHIALAHVNPKCFEFKKGQSANNSQNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSEN 480
            |..|.||||||:.|   .|...::..||                     :.||||:|:.|.|.||
  Rat   407 NEFITLAHVNPQSF---PGNKEHHKANN---------------------YVSMWFLGIIFRRVEN 447

  Fly   481 ---LNVDLTESIQNFTEHVMMHGVNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHN 542
               :|:|||..||:||:.|.....||.|||:||.|:|.|||:|||..||.::.|::::||:...:
  Rat   448 AESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYLPAEILQKKKKSLSDVS 512

  Fly   543 NFNNTLLANRKRLSTELAQSQ---DPLPPGQQPSSGNRGRDSGAKIQRLSDSLT--EENSNAS-- 600
            ..:..|.:.|..|.:....|.   |...|...|.|.::..:        .||.|  .|.|||.  
  Rat   513 RSSGGLQSKRSSLDSNCLDSSRDTDSGTPFNSPGSAHKPSN--------PDSPTGDAERSNAEPM 569

  Fly   601 SDMGAGTPTTPTTAQLSAPSFKSSGKNGSEIDVVEQEPTQPHNNGNASSNTTTTEVACSXQPPTL 665
            :.:....|:.|....||.|...:.|      |...:..:.|      :..|..|.|..| .|...
  Rat   570 AVIVEKLPSVPPAQGLSIPVIGAKG------DAAVKAVSSP------AVCTIPTVVGRSVIPRVT 622

  Fly   666 HPHPPHQ-QP-------------PPAPPQPPA-----HHHHHQKFRKNNNA--AAAAASNSIFNQ 709
            .||.|.| ||             |.....||.     .....:||.:..:|  .:.||.:   .:
  Rat   623 TPHNPVQGQPHLNGISNITKNVTPKRSHSPPTDGTAKRLKDIEKFIRLESAFKESRAAED---RK 684

  Fly   710 RSILHAASSLSAALSITGHKRKQQTATSTTMISSSNIAHSN 750
            |..:.|....|..:......||::..:.....|||.:..||
  Rat   685 RKPMDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPASN 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
hrgNP_001261097.1 PTZ00418 28..600 CDD:240410 322/579 (56%)
PAP_central 29..371 CDD:282745 230/341 (67%)
PAP_RNA-bind 374..534 CDD:282743 74/162 (46%)
PapolgNP_001100714.1 PTZ00418 3..560 CDD:240410 320/574 (56%)
PAP_central 20..363 CDD:282745 230/342 (67%)
PAP_RNA-bind 365..504 CDD:282743 74/162 (46%)
PRK04654 <489..632 CDD:135173 40/162 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 500 1.000 Domainoid score I332
eggNOG 1 0.900 - - E1_COG5186
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56959
Inparanoid 1 1.050 637 1.000 Inparanoid score I796
OMA 1 1.010 - - QHG48793
OrthoDB 1 1.010 - - D252593at33208
OrthoFinder 1 1.000 - - FOG0001429
OrthoInspector 1 1.000 - - otm44964
orthoMCL 1 0.900 - - OOG6_100691
Panther 1 1.100 - - LDO PTHR10682
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X722
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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